PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00844.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22540.4 Da    PI: 9.26
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00844.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.61e-25959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i++ks rqv f+kRr+g+lKKA+ELS+LCd++va +i+s++gklye+ss
  Sme2.5_00844.1_g00006.1  9 KPIQDKSCRQVAFCKRRTGLLKKAKELSILCDVDVAAVIISNSGKLYEFSS 59
                             689**********************************************96 PP
2K-box33.51.8e-121111752587
                    K-box  25 kkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                              k++ ++L   ++qR l   + + L + +L +Le++L+ +l ++Rs+K++l+le++e l +k  ++
  Sme2.5_00844.1_g00006.1 111 KQKKRSLTksKSQRELEQTNADGLPVADLIHLENELQAALIQVRSRKTHLMLESVEALHEKVAKI 175
                              55666666557888888889999************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.231161IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-25263IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.455100195IPR002487Transcription factor, K-box
PfamPF014861.2E-8119175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRRKVEIKP IQDKSCRQVA FCKRRTGLLK KAKELSILCD VDVAAVIISN SGKLYEFSST  60
NRVSIECLCV IPDVLKPEAR LKMCFECFAL LNVHFCVVVK GCFTDTRATS KQKKRSLTKS  120
KSQRELEQTN ADGLPVADLI HLENELQAAL IQVRSRKTHL MLESVEALHE KVAKININRE  180
VNVDFTDLCG QQRVTLNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A7e-16161161MEF2 CHIMERA
6bz1_B7e-16161161MEF2 CHIMERA
6bz1_C7e-16161161MEF2 CHIMERA
6bz1_D7e-16161161MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170243.17e-58PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
TrEMBLA0A0V0HME95e-58A0A0V0HME9_SOLCH; Uncharacterized protein
STRINGSolyc12g087830.1.13e-52(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-29AGAMOUS-like 6