PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00844.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 354aa    MW: 40318.8 Da    PI: 9.9547
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00844.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.89.2e-26959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i++ks rqv f+kRr+g+lKKA+ELS+LCd++vav+i+s+ g+l+e+ss
  Sme2.5_00844.1_g00009.1  9 KQIKDKSCRQVAFCKRRKGLLKKAKELSILCDVDVAVVIISNGGRLHEFSS 59
                             68***********************************************96 PP
2K-box34.87.1e-132883314588
                    K-box  45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                               L++ eL++Le++L+ +l ++Rs+K++l+le++e l +k  +++
  Sme2.5_00844.1_g00009.1 288 GLTVSELNHLENELQAALIQVRSRKTHLMLESVEALHEKVAKIN 331
                              699**********************************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.076161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-25279IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-22323IPR002100Transcription factor, MADS-box
PfamPF003195.8E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-223859IPR002100Transcription factor, MADS-box
PfamPF139762.2E-8120159IPR025724GAG-pre-integrase domain
PfamPF077274.6E-7151209IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PROSITE profilePS512977.337256346IPR002487Transcription factor, K-box
PfamPF014864.9E-9285330IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRRKVEIKQ IKDKSCRQVA FCKRRKGLLK KAKELSILCD VDVAVVIISN GGRLHEFSST  60
NRGEPTIAFI GELEHIDSWE TFRMSLSNFA PDSVISMDFA KSNVLNEEMR RKSQGSSSSD  120
VLVAVEDDKS STLWHKRLSH ISEKGLNVLA KKKLLSNFKD LGHAKQNLGM RITCLRDKRK  180
IYLSQKKYIE RVLECFNIKN AKLVCTPLTS HMKLSKKMCP TTKEEKENMA KIPYSSIIGS  240
LMYAMVCTRP DIVHPVGVVS RFLDNQGKEH WEAVKWILRE LDETNSDGLT VSELNHLENE  300
LQAALIQVRS RKTHLMLESV EALHEKVAKI NINRKVNANF TDLCGQQTVT LNFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-14161161Myocyte-specific enhancer factor 2B
1tqe_Q2e-14161161Myocyte-specific enhancer factor 2B
1tqe_R2e-14161161Myocyte-specific enhancer factor 2B
1tqe_S2e-14161161Myocyte-specific enhancer factor 2B
6c9l_A2e-14161161Myocyte-specific enhancer factor 2B
6c9l_B2e-14161161Myocyte-specific enhancer factor 2B
6c9l_C2e-14161161Myocyte-specific enhancer factor 2B
6c9l_D2e-14161161Myocyte-specific enhancer factor 2B
6c9l_E2e-14161161Myocyte-specific enhancer factor 2B
6c9l_F2e-14161161Myocyte-specific enhancer factor 2B
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6445971e-152DQ644597.1 Solanum melongena clone pS.m.E Ty1-copia retrotransposon nonfunctional polyprotein gene, partial sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.33e-23MIKC_MADS family protein