PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00848.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 360aa    MW: 41395.6 Da    PI: 4.6412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00848.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.4e-16857150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             k+i+n ++rq+tfskR + + KKA+E+ + Cd++v+ + +s+ g+l  +s
  Sme2.5_00848.1_g00001.1  8 KKIDNVTKRQITFSKRCTHLYKKAKEIAICCDTNVLFVALSPAGRLTKFS 57
                             68********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.493160IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-16159IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-13222IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-17375IPR002100Transcription factor, MADS-box
PfamPF003193.5E-15956IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-132237IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-133758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRKIEIKKI DNVTKRQITF SKRCTHLYKK AKEIAICCDT NVLFVALSPA GRLTKFSGPK  60
RDYEPALDQV PSLHQLVWCE RNLQLSLQKV KARKMELEKQ EKMNAQFSTQ QIDPQHFDTN  120
NWINPYSSSF QESIYQDHWI DKGKAVANSS SNYAYTPFFA SSSQFENVSY PPIQNLSPYI  180
PLQSQQQNMV VDVQQNQVQT FGQSQVVDIQ QNQVQTFRQS EAQFTFGENS DNSIKDFWYN  240
IYNSTRPNLS PLTIMEPGLN NPSQLGLEYT SSAWTNTIND NNNNNINNNN NQVIQTNDHS  300
SVPSNAIAPI ASGFNYSMEE DTNVENNEYF AEKSFDNDAW QLDDDFLTEI FNGEEYRSLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886284.11e-122floral homeotic protein APETALA 1 C-like
TrEMBLA0A3Q7G2B21e-116A0A3Q7G2B2_SOLLC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-15AGAMOUS-like 66