PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00860.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ERF

Protein Properties

Length: 196aa MW: 21604.4 Da PI: 7.4193

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00860.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56	1e-17	17	67	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Sme2.5_00860.1_g00007.1 17 PVFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 67 579**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.3E-11	17	67	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-33	18	81	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.4E-31	18	76	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.537	18	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-21	18	76	IPR016177	DNA-binding domain
PRINTS	PR00367	3.6E-9	19	30	IPR001471	AP2/ERF domain
CDD	cd00018	2.02E-30	19	77	No hit	No description
PRINTS	PR00367	3.6E-9	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MISNKSIKRN RDSSKHPVFR GVRMRNWGKW VSEIREPRKK SRIWLGTFPN PEMAARAHDV 60 AALSIKGNSA ILNFPELAGL LPRPVTLSPR DIQAAAAKAA AMDKFDNNNN NNNITSPTTS 120 PNSSSLSSLV SAIDLATSEE LTQIIELPRL GTSFFGDELS NDFVFADCSA VETAWLYPED 180 GGMISSCFDP SLLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	13	76	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF547975	0.0	KF547975.1 Solanum melongena cultivar Pusa Uttam ethylene responsive factor 20 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006359762.1	1e-106	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	2e-64	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0C4LFE5	1e-112	A0A0C4LFE5_SOLME; Solanum melongena cultivar Pusa Uttam ethylene responsive factor 20 mRNA (Fragment)
STRING	PGSC0003DMT400005709	1e-105	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-60	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]