PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00861.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 245aa MW: 27530.1 Da PI: 5.9485

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00861.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	127.5	4.9e-40	49	152	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql++ w++q i++ ++fknh+lP++r+kki+k+d dv+m+s eaP ll+kacelfi elt+r+ l+a e krrtlkk+d ++v Sme2.5_00861.1_g00004.1 49 QLQVLWASQcdeIQQISNFKNHKLPISRMKKIMKSDRDVRMVSGEAPFLLAKACELFISELTFRASLQASEYKRRTLKKTDFMDVV 134 799**998889999****************************************************************** PP NF-YC 84 trtdifdflvdivprdel 101 ++t+ifdflvd+ de+ Sme2.5_00861.1_g00004.1 135 KQTEIFDFLVDVFSGDEI 152 *********9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.02E-25	28	143	IPR009072	Histone-fold
Pfam	PF00808	1.4E-17	71	130	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.5E-26	72	146	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MRSPPTTSSI TPWQTNLTNQ QPKQRRLEAT TVQSSGDPDR HLNQHWQDQL QVLWASQCDE 60 IQQISNFKNH KLPISRMKKI MKSDRDVRMV SGEAPFLLAK ACELFISELT FRASLQASEY 120 KRRTLKKTDF MDVVKQTEIF DFLVDVFSGD EIEEEASGLW PGMGGSTSGV PYPYPPMEPP 180 APPMGQPAPL MGQPDPSGVV VPSHAMPWVP HSRYIHPSLQ AWEFLLQTDE DNPSATGGNS 240 RQGNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	9e-31	56	146	2	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351458.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_015165982.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_015165983.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_015165984.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_015165985.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_015165986.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_015165987.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_015165988.1	2e-64	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	2e-51	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A3Q7H1D8	6e-61	A0A3Q7H1D8_SOLLC; Uncharacterized protein
TrEMBL	Q2VY18	6e-61	Q2VY18_SOLLC; CONSTANS interacting protein 2a
STRING	Solyc06g072040.1.1	9e-62	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-44	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]