PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00864.1_g00010.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 314aa MW: 36225.9 Da PI: 6.0587

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00864.1_g00010.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.4	2.3e-11	185	233	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L ++ l Sme2.5_00864.1_g00010.1 185 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQAEVSVLSPRVAYLD 233 899**********************************988877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-13	181	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.68	183	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-13	185	236	No hit	No description
Pfam	PF00170	6.8E-10	185	232	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-11	185	239	No hit	No description
CDD	cd14703	2.21E-22	186	236	No hit	No description
PROSITE pattern	PS00036	0	188	203	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAHLPPRVPI TQNWPDFSSV HQKIETISTT VNHHHNNPNP SWVDEFFDYS SAKRGSHRRS 60 ISDSIAFLEA PMVEECRIRL SSSGTRTTTG AEFEKFDDEQ LMSMFNDDMA NNKNDSVDHH 120 NSNPSSPSDH NSINHEEQKI NVSTEQQQQQ QQQLKIEPEE VESSCKSDNE QTTVDHSTEK 180 IVDPKRIKRI LANRQSAQRS RVRKLQYISE LERSVTTLQA EVSVLSPRVA YLDHQRLVLN 240 VDNSVLKQKI AALAQDKIFK DAHQEALKRE IERLREKYYQ QNLKKMENDD DDDNPTKTQP 300 EANNASEKKE QLVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210360	1e-39	AC210360.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0184G23, complete sequence.
GenBank	HG975446	1e-39	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	1e-39	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348841.1	1e-171	PREDICTED: basic leucine zipper 61
Swissprot	Q9M2K4	1e-105	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	M1AJT9	1e-170	M1AJT9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400024289	1e-171	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1775	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	6e-97	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]