PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00865.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 246aa    MW: 28390.1 Da    PI: 5.931
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00865.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-131552271288
                              HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               ++ +++p +fa++    +      k ++l +e+g+ W v++  + +++++ +++GW eF ++n++  g ++ Fkl++ +
  Sme2.5_00865.1_g00004.1 155 HTNFMTIPMRFAARTnifD-----LKNMRLVNEKGKAWGVEI--EHTGCAVRIKRGWAEFRRQNKISIGQTCRFKLIQGH 227
                              45779******98884443.....347***************..9999***************************99743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-14141232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-15143232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.646144238IPR003340B3 DNA binding domain
CDDcd100171.01E-10145236No hitNo description
SMARTSM010195.1E-5147238IPR003340B3 DNA binding domain
PfamPF023621.0E-11154232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLTKTCLLKT DVAGIWWKAK IVREKPNYFI YEEDWSHDME IVASDSSLDI SDHSAKNLSY  60
GPLAEKRKRQ EGKEEHDIPI NIQTNATITE EEEDDIPVNL QTNANIIEEE ESLDKEVREA  120
NSGSDEDGPK NSSRYSLVNF DCDDPYFEIV IKKTHTNFMT IPMRFAARTN IFDLKNMRLV  180
NEKGKAWGVE IEHTGCAVRI KRGWAEFRRQ NKISIGQTCR FKLIQGHAAI VLQVYKIPTP  240
RSLQHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.12e-71PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM1DLV32e-80M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910923e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-09B3 family protein