PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00867.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 250aa    MW: 28604.8 Da    PI: 4.4534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00867.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000112446123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ Fs+   L  H++ H
  Sme2.5_00867.1_g00002.1 24 YRCSFCKRGFSNAQALGGHMNIH 46
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-62250No hitNo description
Gene3DG3DSA:3.30.160.603.7E-42248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4682451IPR007087Zinc finger, C2H2
SMARTSM003550.00532446IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEKSDQIVTW SSEELLGLGQ VKFYRCSFCK RGFSNAQALG GHMNIHRRDR ARLREFSSDQ  60
NLLSLDINNS IYPPPSPPLS PPPPTDDERE ESLYDDSITC SSLKRPCVTY HEENDHPTSK  120
VNDDHNPPPC PPADDDLFQR EVSSYDETIF SSSLKRPCVT YHEENDNLIT SKVDYYDHNH  180
EVMIIGDPLQ LPLFKETPLT KEASNCMEGQ VENKGMQLNP VSELDLELRL GMEPPESSTE  240
MDLRFELHKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754493e-76HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755223e-76HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055467.11e-100uncharacterized protein LOC107002056
TrEMBLA0A3Q7IMX02e-98A0A3Q7IMX0_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000287836e-80(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.18e-15C2H2 family protein