PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00886.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 684aa    MW: 76826.1 Da    PI: 9.5596
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00886.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.4e-26959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifs tgkl++++s
  Sme2.5_00886.1_g00016.1  9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSATGKLFDFAS 59
                             68**********************************************986 PP
2K-box37.69e-14951562384
                    K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                              +L+kei    re+R++ Ge+Le Lsl+eLqq+e++Le + +++ + K+  ++ +i +lq+k 
  Sme2.5_00886.1_g00016.1  95 RLNKEIADKARELRQMRGEELEGLSLEELQQIEKKLEAGFNRVLDIKSTRIMGEITNLQRKI 156
                              7899999999**************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.772161IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-29371IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241057IPR002100Transcription factor, MADS-box
CDDcd002655.70E-321277No hitNo description
PRINTSPR004044.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.50486178IPR002487Transcription factor, K-box
PfamPF014861.1E-1095156IPR002487Transcription factor, K-box
PfamPF102502.9E-64272621IPR019378GDP-fucose protein O-fucosyltransferase
CDDcd112992.11E-146272627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSA TGKLFDFAST  60
SMKDILGKYK LQSASLEKVE QPSLDLQLEN SLNMRLNKEI ADKARELRQM RGEELEGLSL  120
EELQQIEKKL EAGFNRVLDI KSTRIMGEIT NLQRKIGMYD GDGESTGTMN YVRQAPTSRR  180
MAWPLQTGGL LMLLLPSLFP SLFTPLSRSY SSLFSEWNAP RSMHSHLLNR ALQQQTSNAQ  240
EAELWSPLPN QGWEACPDKQ VTQPIGRKSQ GYIQVFLDGG LNQQRMGICD AVAVAKILNA  300
TLIIPYLEVN PVWQDSSSFA DIFDVDHFMS VLSGDVSIVK ELPSDYSWST REYYATGIRP  360
TRIKTAPVHA SASWYLENVL PVMQSYGIVA IAPFSHRLAF DSQPSDIQHL RCKVNFHALV  420
FVPHVRTLGD ALVSRLRSPP SLDNASSATP FRNRANDRAG AGKYVVLHLR FDKDMAAHSA  480
CDFGGGKAEK LALAKYRQVL WQGRVLNSQF TDEELRGQGR CPLTPEEIGI LLSALGFNNS  540
TRLYLASHKV YGGEARLSAL RQLFPFMEDK KSLASSHELS EVEGKASLLA AVDYYVSMQS  600
DIFISASPGN MHNALLGHRA YKNLKTIRPN MTLLGKLFLN KTMEWSEFQQ AVQQGHKNRQ  660
GQMRIRKEKQ SIYTYPAPDC MCKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18169169MEF2C
5f28_B2e-18169169MEF2C
5f28_C2e-18169169MEF2C
5f28_D2e-18169169MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6437300.0AY643730.1 Solanum macrocarpon MSM2 (MSM2) mRNA, complete cds.
GenBankHQ7173560.0HQ717356.1 Solanum macrocarpon msm2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569051.10.0PREDICTED: uncharacterized protein At1g04910 isoform X1
SwissprotQ7Y0300.0OFT31_ARATH; O-fucosyltransferase 31
TrEMBLA0A1U8GCK20.0A0A1U8GCK2_CAPAN; Uncharacterized protein
TrEMBLA0A2G2X0040.0A0A2G2X004_CAPBA; Uncharacterized protein
TrEMBLA0A2G2ZQX00.0A0A2G2ZQX0_CAPAN; uncharacterized protein At1g04910 isoform X1
STRINGXP_009624657.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Hansen SF,Harholt J,Oikawa A,Scheller HV
    Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families.
    Front Plant Sci, 2012. 3: p. 59
    [PMID:22629278]
  2. Neumetzler L, et al.
    The FRIABLE1 gene product affects cell adhesion in Arabidopsis.
    PLoS ONE, 2012. 7(8): p. e42914
    [PMID:22916179]
  3. Wang Y,Mortimer JC,Davis J,Dupree P,Keegstra K
    Identification of an additional protein involved in mannan biosynthesis.
    Plant J., 2013. 73(1): p. 105-17
    [PMID:22966747]
  4. Voxeur A,André A,Breton C,Lerouge P
    Identification of putative rhamnogalacturonan-II specific glycosyltransferases in Arabidopsis using a combination of bioinformatics approaches.
    PLoS ONE, 2012. 7(12): p. e51129
    [PMID:23272088]