PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00896.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 161aa    MW: 18161.9 Da    PI: 9.7897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00896.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000253658123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C+k+Fs+   L  H  +H
  Sme2.5_00896.1_g00002.1 36 FECKTCNKRFSSFQALGGHRASH 58
                             89**********99999998887 PP
2zf-C2H2130.0003178100123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  Fs    L  H+r+H
  Sme2.5_00896.1_g00002.1  78 HRCSICGAEFSLGQALGGHMRRH 100
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-934100No hitNo description
PfamPF139123.0E-123660IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0973663IPR007087Zinc finger, C2H2
SMARTSM003550.0933658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-476103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.99378105IPR007087Zinc finger, C2H2
PfamPF139129.7E-1178103IPR007087Zinc finger, C2H2
SMARTSM003550.06978100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTTMKRSREN NGQIEAEAMA SCALMLLSGF NNSKDFECKT CNKRFSSFQA LGGHRASHKK  60
RPKLLGDFLI EAKKNKMHRC SICGAEFSLG QALGGHMRRH RDEINKITTE KTTMIPILNK  120
SNSSKRICSL DLNLTPNDDS DNVDDDFKLW PIASPILRIF I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546676.12e-80PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD47e-34ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2G2VNA61e-79A0A2G2VNA6_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000401412e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-36C2H2 family protein