PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00896.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 168aa    MW: 19075.9 Da    PI: 10.6106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00896.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000344769123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C+k+F++   L  H ++H
  Sme2.5_00896.1_g00004.1 47 FECKTCNKRFPSFQALGGHRSSH 69
                             89**********99999999988 PP
2zf-C2H212.90.0003490112123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++Cg  Fs    L  H+r+H
  Sme2.5_00896.1_g00004.1  90 HKCTICGVEFSLGQALGGHMRRH 112
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-847112No hitNo description
PfamPF139122.9E-124771IPR007087Zinc finger, C2H2
PROSITE profilePS501579.934774IPR007087Zinc finger, C2H2
SMARTSM003550.0974769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-484115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-990113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.99390117IPR007087Zinc finger, C2H2
SMARTSM003550.09590112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSAPKRSRED DRQVEAEAMA NCALIALLSR FNNTSSSSSD HHHVNDFECK TCNKRFPSFQ  60
ALGGHRSSHN KRPKLLGEFL VQTKKKNKMH KCTICGVEFS LGQALGGHMR RHRNEINKTS  120
KMIPVLTKSN SNKRIFCLDL NLTPRDDNVD FKLWPTTPVA SPVLRIFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363363.11e-106PREDICTED: zinc finger protein ZAT11-like
TrEMBLM1B9D71e-105M1B9D7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401431e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-36C2H2 family protein