PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00899.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 605aa    MW: 68623.6 Da    PI: 8.7368
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00899.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26057.92.9e-185205794099
                   DUF260  40 snvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                              snv+kll+++++++reda++sl+yeAe+r++dPvyG+vg i+ lq+q+  l++el+++++
  Sme2.5_00899.1_g00009.1 520 SNVSKLLNEIQPHQREDAVNSLAYEAEVRLKDPVYGCVGAISVLQRQVILLQKELDATNA 579
                              89*****************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
PROSITE profilePS5089111.44476581IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-17519578IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGKTGCTIDG SLDDSKFSEP MPWIGIYVAV ASAACALGMA MDALHELRHR KFWFPCNFFS  60
LNATTLTLLA VATKLSVDLN TSMPRRQDQL TKLSSAALIC TVIAHFIPSL GLMENKELLM  120
NIIALGIFVI TAIMNIGIQL ATDVIYVFFK VHIALMFLTL VLFLLLISSA VTTPTTKRYL  180
DLKYNNKYKL ANKECNIIDI CTIEKLKDEL MKFWTMAYTS CPDFVGARLA TCTASGVFCL  240
ISTVTYPEAM FRSYFYHKSF NICSGDSEYK WSTTLILVTH TVTIGVGTIA AAFRWFRAIN  300
FRCPKKANNA CKFKLFKVEN YWIRMLLQWK ESPLDFRYCG RHGRKFAHKT KNKLLDFCIW  360
MQILMVSLSK LVWLISIFLV SWSLISCRKA IKMLKCNSMV SSVDTELGSR TSSKPDLSHY  420
ALHLQGEEAF IDLIMQSNRD VVDHWIEMGK KKQPKHLLRF LEKLKSSPGF KGVHEFDSAH  480
IPSLDLEDPP NCWALPVVTL TSIAIALPNM EFHSIKELIS NVSKLLNEIQ PHQREDAVNS  540
LAYEAEVRLK DPVYGCVGAI SVLQRQVILL QKELDATNAD LMRYANNYER VYNNEIMVNQ  600
MVNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2952058550115LOB family transfactor Ramosa2.1
5ly0_B6e-2952058550115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563344.10.0PREDICTED: uncharacterized protein LOC107862298
TrEMBLA0A1U8G5Q30.0A0A1U8G5Q3_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AEP40.0A0A2G3AEP4_CAPAN; uncharacterized protein LOC107862298
STRINGSolyc08g078770.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-33LOB domain-containing protein 25