PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00901.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 172aa    MW: 19306.7 Da    PI: 6.7608
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00901.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.3e-41161151100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C ++C l pyfp ++p kf ++hk+FGasn++kll++lp ++r da+sslvyeA+ar+rdP+yG++gvi++l++q
  Sme2.5_00901.1_g00009.1  16 PCAACKFLRRRCFDNCLLKPYFPPSEPLKFVVAHKIFGASNIIKLLQELPATQRADAVSSLVYEANARMRDPIYGSAGVITNLHEQ 101
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              + +l+a++al+++e
  Sme2.5_00901.1_g00009.1 102 MTKLQAQIALARAE 115
                              *********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.26515116IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-3916113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MADFSSSTEN RSLTTPCAAC KFLRRRCFDN CLLKPYFPPS EPLKFVVAHK IFGASNIIKL  60
LQELPATQRA DAVSSLVYEA NARMRDPIYG SAGVITNLHE QMTKLQAQIA LARAEISNLQ  120
SQNANLMTLI NKQYSSSSSP DYHYPFQDST LLSYDDNNSS YLGDTTWDSF WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-401611611111LOB family transfactor Ramosa2.1
5ly0_B2e-401611611111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340077.15e-96PREDICTED: LOB domain-containing protein 1-like
TrEMBLA0A3Q7ED823e-87A0A3Q7ED82_SOLLC; Uncharacterized protein
STRINGSolyc01g044520.1.16e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-57LOB domain-containing protein 1