PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00912.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ZF-HD

Protein Properties

Length: 87aa MW: 9755.83 Da PI: 8.2887

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00912.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.1	7.6e-32	23	77	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY eC+kNhAas+Gg++vDGC+E+mp+ ++t+ +l+CaACgCHRnFHRreve+e Sme2.5_00912.1_g00003.1 23 RVRYVECQKNHAASVGGYVVDGCREYMPE---DTTSGTLNCAACGCHRNFHRREVETE 77 79************************8...66789***************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-21	19	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	5.4E-27	24	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-25	25	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.183	26	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MKKVLRRNDS SRNCTNSSFT VRRVRYVECQ KNHAASVGGY VVDGCREYMP EDTTSGTLNC 60 AACGCHRNFH RREVETEVAS DCTSTTT

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122544	2e-81	AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence.
GenBank	AC226507	2e-81	AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence.
GenBank	AM261628	2e-81	AM261628.1 Solanum lycopersicum mRNA for mini zinc finger protein (ima gene).
GenBank	EU161283	2e-81	EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds.
GenBank	HG975441	2e-81	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	2e-81	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234189.1	1e-51	mini zinc finger protein
Swissprot	Q9LJW5	4e-28	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A2G2V060	4e-50	A0A2G2V060_CAPBA; Mini zinc finger protein 1
TrEMBL	A0A2G3ACA2	4e-50	A0A2G3ACA2_CAPAN; Mini zinc finger protein 1
TrEMBL	A0A2G3D9P7	4e-50	A0A2G3D9P7_CAPCH; Mini zinc finger protein 1
TrEMBL	A0ZXL1	3e-50	A0ZXL1_SOLLC; Mini zinc finger protein
STRING	Solyc02g087970.1.1	6e-51	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1105	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-30	mini zinc finger 2

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]