PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00923.1_g00010.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 258aa MW: 28457.2 Da PI: 6.149

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00923.1_g00010.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.2	1.6e-55	80	183	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+ Sme2.5_00923.1_g00010.1 80 QLQTFWANQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAI 165 89****9999********************************************************************** PP NF-YC 84 trtdifdflvdivprdel 101 trtdifdflvdivpr++l Sme2.5_00923.1_g00010.1 166 TRTDIFDFLVDIVPREDL 183 *************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.74E-34	69	174	IPR009072	Histone-fold
Pfam	PF00808	2.6E-22	102	165	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.7E-38	103	180	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDHHGNGQPP GIGVVTSSAP TYGVPYQANQ MAGPSPPAAS AGAIQSPQAA SLSASSAQMA 60 QHQLAYQHIH QQQQQQLQQQ LQTFWANQYQ EIEQVTDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVVFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180 EDLKDEVLAS IPRGTLPVGG PTEGLPFYYG MPPQSAPPMG ASGMYMGKPV DPALYAQQPR 240 PYMSQPIWPQ QQQPPSDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-62	88	180	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312630.1	1e-164	nuclear transcription factor Y subunit C-9-like
Refseq	XP_009590081.1	1e-164	PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_009590082.1	1e-164	PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_009590083.1	1e-164	PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_016480552.1	1e-164	PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_016480553.1	1e-164	PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
Swissprot	Q8L4B2	2e-84	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A076FU26	1e-162	A0A076FU26_TOBAC; CONSTANS interacting protein 2b
STRING	XP_009590081.1	1e-163	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	2e-80	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]