PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00956.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 608aa    MW: 68248.4 Da    PI: 4.5761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00956.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.5e-12264286426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              + C ++++tGtC+yG +CkF+H+
  Sme2.5_00956.1_g00002.1 264 VDCAYYMKTGTCQYGVNCKFNHP 286
                              68********************8 PP
2zf-CCCH28.23.2e-09312334527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              +C++++  G CkyG+ Ck++H++
  Sme2.5_00956.1_g00002.1 312 ECKYYLTEGGCKYGNACKYSHSR 334
                              6********************95 PP
3zf-CCCH40.44.7e-13355379226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              +++ C++++rtG CkyG++C+F+H+
  Sme2.5_00956.1_g00002.1 355 GEKDCPYYMRTGSCKYGSNCRFHHP 379
                              7889********************9 PP
4zf-CCCH26.98.3e-09491517127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++ C++f +tG Cky ++CkF+H++
  Sme2.5_00956.1_g00002.1 491 PGQPDCSYFIKTGDCKYKSNCKFHHPR 517
                              5789*********************96 PP
5zf-CCCH36.96.1e-12539564227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +++ C+f+ r+G+CkyG+ CkF H++
  Sme2.5_00956.1_g00002.1 539 GQAVCSFYNRYGICKYGPACKFDHPE 564
                              7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-5260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788260288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6261290IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10264286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4266285IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535307335IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-7312334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6313343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5313334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718353381IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7353380IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-6355381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5359378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976490518IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-4490517IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5492517IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5495518IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7537564IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159537565IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9539564IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5540565IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4542565IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MEAIESLYMH NLNQPTLDKQ YLGFDPQPPE TPSFSSEPSL RNPTRNPPND EGNDVDDEEV  60
LQFIVEDLQS LVLNQAFSEE RAKRGVHGGD GGDEFIKEEY RDEDEEAVRM IVEEIQSLVL  120
NQAFREERAK GDIQEENGRD EVGNEYGGNH YEGGDHSWSG TGNVIDVENE KGDEVRSTEW  180
GYDHDEDGDY SWSENGIVVD VENEEGGEAD SKEWGYNHYE DGDSSWSENG IDVANENRNE  240
AGSKEWGFNT NGRRLNYPIR PDAVDCAYYM KTGTCQYGVN CKFNHPSRRR NQWAMEMGKQ  300
KEESEERAGL IECKYYLTEG GCKYGNACKY SHSRIKDASS PVLDFNFLGL PIRPGEKDCP  360
YYMRTGSCKY GSNCRFHHPD PTTATGNNPS FGHNTDGSTP VQSASYSPVA SWSSPRASNE  420
TAPFVPVVYP ASQGILPLSP QWNRFQAPVY PTSEKSLPTP PAFTMRDPAT KTNIYSRPPP  480
PWLIEEYPER PGQPDCSYFI KTGDCKYKSN CKFHHPRTQK SKTNPLSVLS DKGLPLRPGQ  540
AVCSFYNRYG ICKYGPACKF DHPEHNDTAA SSPGFAFYQP PFDNSATSDD LRMARKGNGS  600
DSLVQQSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-141HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347414.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-103C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLM1CKS70.0M1CKS7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000696260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-102C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]