PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00965.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 248aa    MW: 29127.1 Da    PI: 6.6016
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00965.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.71.7e-26137186352
                   RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              ++++le++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRk+ksl
  Sme2.5_00965.1_g00005.1 137 DTLELEEIQRYFHVPITKAAKELRVGLTVLKKRCRELNIMRWPHRKLKSL 186
                              789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.359120208IPR003035RWP-RK domain
PfamPF020421.1E-23138186IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MENQNDQFDW LYAQEEYPPS PFGTWQQDSR LSNGGLLNFE IDPFQISNDL QTNHLPYFGL  60
EEFEEICQDL KLLPCPFHQE DNNTPMHGTN SNVMPLNVVH DPLGECQVTS SAFYEISGSS  120
TEFVKKHNNN GRYKKSDTLE LEEIQRYFHV PITKAAKELR VGLTVLKKRC RELNIMRWPH  180
RKLKSLQTLI HSVKEMGLMS EVEMLEEHQR MVERVPEMEL TERTKKLRQA CFKANYKKRR  240
ASMPPAFY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-65HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318117.11e-140protein RKD3
TrEMBLM1BL911e-149M1BL91_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000476811e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.13e-43RWP-RK domain-containing protein