PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00977.1_g00014.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 1043aa MW: 114970 Da PI: 5.3378

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00977.1_g00014.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78	1.1e-24	595	692	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg..............................................vclTvLKriCRqyG 40 aek++sl++l++yFs+++kdAAk++g vc+T+LKriCRq+G Sme2.5_00977.1_g00014.1 595 AEKHVSLSVLQHYFSGSLKDAAKSIGgfggselqhlfeeseamidflrslhtlysffsipliqyfyinnifvVCPTTLKRICRQHG 680 5899******************************************************************************** PP RWP-RK 41 IkRWPhRkiksl 52 I+RWP+Rki+++ Sme2.5_00977.1_g00014.1 681 ISRWPSRKINKV 692 ********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	1.9E-21	599	692	IPR003035	RWP-RK domain
PROSITE profile	PS51519	12.514	625	712	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-19	940	1027	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-21	942	1025	No hit	No description
SMART	SM00666	2.3E-20	942	1025	IPR000270	PB1 domain
Pfam	PF00564	4.5E-15	942	1024	IPR000270	PB1 domain
PROSITE profile	PS51745	19.953	942	1025	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence Send to blast
MERGVGFWAS PTGHMEGGAS FDSNTRSSNV DSFNNVMEIM DLDAYAGWCT SPSAAEQILA 60 SYASFSPMNP MSQSYAPFEG SSYAEQYTGA FPPMNANMMV SNHDRGEKMM FGQNDDQLHF 120 MVDSVDQGDG LVAKKSKRSS QQSDGADIGT SMILRSPSQP LAERMLGALA MFKESSGAGI 180 LAQVWIPIKN GDQYVLSTCE QPYLLDQVLS GYREVSRKFT FDIETKPGAI PGLPGRVFSS 240 RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFDDD ACETPCCAVL ELVTMKEKPN 300 FDLEIDNVCQ ALQAVNLRSI VPPRLHSQNL SNNQRDALAE IAVVLRAVCH AHKLPLALTW 360 IPCSVSEGEG NESIRVCARG CNANLNDKCV LCVEDTACYV SDKEMQGFVH ACMEHFLKEG 420 EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF 480 FLPVNMKVSI EQQLLLNNLS GTMQRICRSL RTVADAELVE QGAKIGLQDG SVPNISPITF 540 SMRNSQHSLD NNSNFINGSP LGVCDSKSDG MHADDFREQT MTGSRRQIEK KRSTAEKHVS 600 LSVLQHYFSG SLKDAAKSIG GFGGSELQHL FEESEAMIDF LRSLHTLYSF FSIPLIQYFY 660 INNIFVVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVLESVQGVE GGLKFDPTTG 720 GLVPASSIIQ DFNVQQNIFF PFEDVSVKNP TSVFQDAVSV PSTSDNDKEN SMMKMKEDSY 780 ADGNQLSQSN HINTPSFRGG DKSSIDVSEF CYESKLASLD AGSSGHACLN LTDSENASLG 840 SFLMKEGCKR WGLNNLVNFD CHFTSRCSYP MAVGGDVDSK MKGDNEMDGD GGVIEHKQAS 900 SSAMTDSSNG SASMVNGSSS SSRSRVEKHS KVEVNYGDSR STITVKATYK EDTVRFKFDL 960 SAGCFLQLYE DVAKRFKLQI GTFQLKYLDD EEEWVMLVND ADLHECLEIL DFGAGRTVKF 1020 LVRDTPCALG SSGSSNCFLA GGS

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence Send to blast

MERGVGFWAS PTGHMEGGAS FDSNTRSSNV DSFNNVMEIM DLDAYAGWCT SPSAAEQILA  60
SYASFSPMNP MSQSYAPFEG SSYAEQYTGA FPPMNANMMV SNHDRGEKMM FGQNDDQLHF  120
MVDSVDQGDG LVAKKSKRSS QQSDGADIGT SMILRSPSQP LAERMLGALA MFKESSGAGI  180
LAQVWIPIKN GDQYVLSTCE QPYLLDQVLS GYREVSRKFT FDIETKPGAI PGLPGRVFSS  240
RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFDDD ACETPCCAVL ELVTMKEKPN  300
FDLEIDNVCQ ALQAVNLRSI VPPRLHSQNL SNNQRDALAE IAVVLRAVCH AHKLPLALTW  360
IPCSVSEGEG NESIRVCARG CNANLNDKCV LCVEDTACYV SDKEMQGFVH ACMEHFLKEG  420
EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF  480
FLPVNMKVSI EQQLLLNNLS GTMQRICRSL RTVADAELVE QGAKIGLQDG SVPNISPITF  540
SMRNSQHSLD NNSNFINGSP LGVCDSKSDG MHADDFREQT MTGSRRQIEK KRSTAEKHVS  600
LSVLQHYFSG SLKDAAKSIG GFGGSELQHL FEESEAMIDF LRSLHTLYSF FSIPLIQYFY  660
INNIFVVCPT TLKRICRQHG ISRWPSRKIN KVNRSLKKIQ TVLESVQGVE GGLKFDPTTG  720
GLVPASSIIQ DFNVQQNIFF PFEDVSVKNP TSVFQDAVSV PSTSDNDKEN SMMKMKEDSY  780
ADGNQLSQSN HINTPSFRGG DKSSIDVSEF CYESKLASLD AGSSGHACLN LTDSENASLG  840
SFLMKEGCKR WGLNNLVNFD CHFTSRCSYP MAVGGDVDSK MKGDNEMDGD GGVIEHKQAS  900
SSAMTDSSNG SASMVNGSSS SSRSRVEKHS KVEVNYGDSR STITVKATYK EDTVRFKFDL  960
SAGCFLQLYE DVAKRFKLQI GTFQLKYLDD EEEWVMLVND ADLHECLEIL DFGAGRTVKF  1020
LVRDTPCALG SSGSSNCFLA GGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362300.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_006362301.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	M1B093	0.0	M1B093_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400034189	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein