PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01004.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 174aa MW: 19849.6 Da PI: 9.0371

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01004.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.1	7.2e-11	14	53	4	43
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +nk+ + sk ++ ++K A LS+LC++++a+iifs + Sme2.5_01004.1_g00008.1 14 KNKRAETAKISKMQKSLFKRADQLSILCGIQIAIIIFSVD 53 677777888999*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.437	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.76E-13	8	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-9	15	55	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MESQSSNVDL ALTKNKRAET AKISKMQKSL FKRADQLSIL CGIQIAIIIF SVDRQPILFG 60 KPDVESVVHQ FREASDLTAP RFYMKMKKKD GENKEREKSI EDDNTQRLSG DFESPYLESL 120 LNLHRQLKDF EDQLIKETDL TQLNQEIKKH KDSKSVSKMN VASSSTLPTN MASP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248432.1	7e-66	agamous-like MADS-box protein AGL62
Refseq	XP_015169511.1	1e-65	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A3Q7IDE0	2e-64	A0A3Q7IDE0_SOLLC; Uncharacterized protein
TrEMBL	M1BPI5	3e-64	M1BPI5_SOLTU; Uncharacterized protein
STRING	Solyc10g012200.1.1	3e-65	(Solanum lycopersicum)
STRING	PGSC0003DMT400049904	4e-65	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-11	AGAMOUS-like 62