PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01016.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18008.6 Da    PI: 10.8361
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01016.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.5e-101159149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +ri n+  r vtfs+Rr+g++K  eE+   ++ ++a ++fs+t + y+y
  Sme2.5_01016.1_g00002.1 11 ERITNEKSRMVTFSRRRKGLFKINEEVESKTGSRIASVVFSPTERPYTY 59
                             69*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.241363IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-11362IPR002100Transcription factor, MADS-box
CDDcd001205.18E-15460No hitNo description
SuperFamilySSF554551.31E-13467IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-8525IPR002100Transcription factor, MADS-box
PfamPF003195.0E-161259IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-82540IPR002100Transcription factor, MADS-box
PROSITE profilePS5092011.35734140IPR018108Mitochondrial substrate/solute carrier
PRINTSPR004044.0E-84061IPR002100Transcription factor, MADS-box
PfamPF001531.1E-872143IPR018108Mitochondrial substrate/solute carrier
SuperFamilySSF1035063.53E-8101144IPR023395Mitochondrial carrier domain
Gene3DG3DSA:1.50.40.108.1E-9102145IPR023395Mitochondrial carrier domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGTGKKKIPI ERITNEKSRM VTFSRRRKGL FKINEEVESK TGSRIASVVF SPTERPYTYG  60
DVDFAIQKHF CRTKLSTSGM KSHQSNSDVV VTGGSRSSST PSIVARDGIV GLYRGFVPSA  120
VKTLPSSSIR LTTFDAVKRL IARSEEEYQK IIEESRRQKA E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582225.16e-33PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G2YZ401e-32A0A2G2YZ40_CAPAN; Uncharacterized protein
STRINGXP_009796162.11e-29(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-13AGAMOUS-like 61