PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01046.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 106aa MW: 12240.9 Da PI: 5.3147

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01046.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.1	2.3e-08	3	46	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++ r v++skR+++++ Ae L a+v +++fs++ k Sme2.5_01046.1_g00006.1 3 LIASEEDRVVSLSKRKKTLFQQAEKLANTARADVGIMLFSPSEK 46 5889999*********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.227	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-13	1	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-10	4	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MKLIASEEDR VVSLSKRKKT LFQQAEKLAN TARADVGIML FSPSEKSCSY GSISIETIVD 60 KYFDVKLEDR QRDYPEVKSD GWAELEDLHK ELEAWKEKEK KSNINV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015158947.1	4e-38	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	M1DHK1	9e-37	M1DHK1_SOLTU; Uncharacterized protein
TrEMBL	M1DZV6	9e-37	M1DZV6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400089159	1e-37	(Solanum tuberosum)
STRING	PGSC0003DMT400097081	1e-37	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-12	AGAMOUS-like 61