PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01077.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 141aa    MW: 15026.7 Da    PI: 5.6665
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01077.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.84.5e-081131342647
                              EE-STT---EEEEEE-SSSTTE CS
                     WRKY  26 rCtsagCpvkkkversaedpkv 47 
                              +Ct+++Cpvkkkvers++ p+v
  Sme2.5_01077.1_g00011.1 113 KCTHPNCPVKKKVERSQDTPSV 134
                              9****************87776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-5113135IPR003657WRKY domain
SuperFamilySSF1182902.35E-5113136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMAPSPS PRTFFSSLLG DDVGSRSTLE GTNETKRENI ASGPQEHVGN  60
SDGNDGAQAA ITEQQPVKLD ALSDPKMSSR GGGLLERMAA RAGFNAPKLN TEKCTHPNCP  120
VKKKVERSQD TPSVYPLTPN T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2403591e-126AC240359.1 Solanum tuberosum chromosome 7 clone RHPOTKEY169K08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346068.14e-58PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_006346069.14e-58PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_006346070.13e-58PREDICTED: probable WRKY transcription factor 2 isoform X2
RefseqXP_006346071.13e-58PREDICTED: probable WRKY transcription factor 2 isoform X2
RefseqXP_015163627.14e-58PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_015163628.14e-58PREDICTED: probable WRKY transcription factor 2 isoform X1
TrEMBLM1C0467e-57M1C046_SOLTU; Uncharacterized protein
TrEMBLM1C0479e-57M1C047_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000569521e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-17WRKY DNA-binding protein 2