PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01078.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 544aa    MW: 60623.1 Da    PI: 6.4351
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01078.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.6e-172174457
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                             + ++t+eq+++Le+ F +++++  +++ +LAk+lg++ rq+ +W+qN Ra++k+
  Sme2.5_01078.1_g00002.1 21 KKRLTQEQVKRLEASFDSTKKLELDQKLQLAKELGVPPRQIAIWYQNSRARWKN 74
                             5679************************************************95 PP
2HD-ZIP_I/II941.7e-3020111293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +k+rl++eqvk LE sF++++kLe ++K +la+eLg+ prq+a+W+qn RAR+k++ lE +y++L+ ++d+  +e++++e+e+e L
  Sme2.5_01078.1_g00002.1  20 NKKRLTQEQVKRLEASFDSTKKLELDQKLQLAKELGVPPRQIAIWYQNSRARWKNQSLELEYTTLQLKLDTTLAEKKQIENENELL 105
                              79************************************************************************************ PP

              HD-ZIP_I/II  88 reelke 93 
                              + elk+
  Sme2.5_01078.1_g00002.1 106 KIELKK 111
                              *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.7711575IPR001356Homeobox domain
SMARTSM003891.0E-131879IPR001356Homeobox domain
SuperFamilySSF466891.92E-151976IPR009057Homeodomain-like
CDDcd000861.14E-142176No hitNo description
PfamPF000461.1E-142174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-172280IPR009057Homeodomain-like
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
CDDcd131329.78E-120143509No hitNo description
PfamPF015541.1E-34153312IPR002528Multi antimicrobial extrusion protein
TIGRFAMsTIGR007975.5E-59153513IPR002528Multi antimicrobial extrusion protein
PfamPF015542.7E-21375514IPR002528Multi antimicrobial extrusion protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006855Biological Processdrug transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MNNFLNSQYL HKHQSILNHN KKRLTQEQVK RLEASFDSTK KLELDQKLQL AKELGVPPRQ  60
IAIWYQNSRA RWKNQSLELE YTTLQLKLDT TLAEKKQIEN ENELLKIELK KVNEMLIAIK  120
QAQAQEELAQ GIIPCSISSD VEEAKNQILF SLPMIVVTSC FYFINLVSVM FAGHLGKIEL  180
AASNLANSWA VVTGLSFMIG LSGALETLCG QGYGAKMYRM MGIHLQTSCI ISFIFSTIIA  240
IIWWNSDTIL ILLHQDPDIA RKAGEFLKFL IPELLAYGLL QNILRFLQAQ SIIMPLVMCS  300
MGCLVVHIGI AYGLVHWTSL GFYGAPLAAS ISIWMSVLAL GVYVLYSERF SLIWRDGLSF  360
EPFHYITINL KLALPSAAMV CLEYWAFELL VLLAGLMPNS QTTTSLIAMS VNTEAIAYTI  420
SYGLSAAAST RVANELGAGN INKAKHAMVV TLKLCVLLAL LVDLALCFGH DIWAGLFSDN  480
TEIINEFATM TPLLLISFVF DFFQGILSGF VDGLDMWYSL PKFGLIATNI IDQMGQSGSL  540
NKEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y50_A6e-821415138379Protein DETOXIFICATION 14
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for protection of the roots from inhibitory compounds. When expressed in a heterologous system, confers resistance to tetramethylammonium chloride. {ECO:0000269|PubMed:11449055}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547101e-80AC254710.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-57k18 map 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089236.10.0protein DETOXIFICATION 18-like
SwissprotQ9LUH21e-150DTX19_ARATH; Protein DETOXIFICATION 19
TrEMBLA0A3Q7IAI60.0A0A3Q7IAI6_SOLLC; Protein DETOXIFICATION
STRINGSolyc10g007100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA219722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.15e-25homeobox protein 52
Publications ? help Back to Top
  1. Diener AC,Gaxiola RA,Fink GR
    Arabidopsis ALF5, a multidrug efflux transporter gene family member, confers resistance to toxins.
    Plant Cell, 2001. 13(7): p. 1625-38
    [PMID:11449055]
  2. Li L,He Z,Pandey GK,Tsuchiya T,Luan S
    Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification.
    J. Biol. Chem., 2002. 277(7): p. 5360-8
    [PMID:11739388]
  3. Hvorup RN, et al.
    The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily.
    Eur. J. Biochem., 2003. 270(5): p. 799-813
    [PMID:12603313]
  4. Marinova K, et al.
    The Arabidopsis MATE transporter TT12 acts as a vacuolar flavonoid/H+ -antiporter active in proanthocyanidin-accumulating cells of the seed coat.
    Plant Cell, 2007. 19(6): p. 2023-38
    [PMID:17601828]