PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01098.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 401aa    MW: 45490 Da    PI: 5.2089
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01098.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.69.3e-25289372186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k+ev+aL+ +r+++++++ +g +k+  Weev++ +++ g+ r++k+Ckekwen+nk+yk++ ++ k r +++ ++cpyf++l+
  Sme2.5_01098.1_g00009.1 289 RWPKSEVQALVSVRTSLDHKFLKG-AKGSVWEEVADGLAKMGYIRTSKKCKEKWENINKYYKRTIDSGKTR-PRNYRSCPYFHELD 372
                              8**********************9.99******************************************97.889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.422282345IPR017877Myb-like domain
PfamPF138373.4E-20288373No hitNo description
CDDcd122031.66E-20288351No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEPFTDGDGH PSNHIASFAD NLAPFPESTN VVYDNPSAVI PSPEIHHLPV SPVRKLRPVR  60
FGNGRNYVDM VDSNCDMDEA LMTCASDLGF LSQFSAQNAS TECGFVDSLV ENGVARGSEA  120
EISAVQQMKS ELDADCLNLI SQTRILEAEF SSSSDDSKSS EAIEEHLNKK RKREARKSLK  180
LYLEDMVKRL MDKQEQMHKQ LIEMIEKKEK ERIIREEAWK QQEVEMAKRD GELRAEETSR  240
NLALIAFLEN LLGEEFQIPK SSEVTSQVKD EGEVHGQEAD VRSDPCNRRW PKSEVQALVS  300
VRTSLDHKFL KGAKGSVWEE VADGLAKMGY IRTSKKCKEK WENINKYYKR TIDSGKTRPR  360
NYRSCPYFHE LDTLYKNGLL NQGAGNCVKI ETENKNVDSE E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768567.10.0trihelix transcription factor GT-2 isoform X2
TrEMBLA0A3Q7JJS70.0A0A3Q7JJS7_SOLLC; Uncharacterized protein
STRINGSolyc11g012720.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-43Trihelix family protein