PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01098.1_g00014.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 224aa    MW: 25221.3 Da    PI: 5.1201
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01098.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.51.7e-5256149295
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              reqdrf+Pianv+rim+++lP +akis+d+ket+qecvsefisfvt+ea+++cq e+rkti+++d+lwa+++lGf+dy+epl++yl
  Sme2.5_01098.1_g00014.1  56 REQDRFMPIANVIRIMRRILPPHAKISDDSKETIQECVSEFISFVTGEANERCQCEQRKTITAEDILWAMSKLGFDDYIEPLTLYL 141
                              89************************************************************************************ PP

                    NF-YB  88 kkyreleg 95 
                              ++yre++g
  Sme2.5_01098.1_g00014.1 142 HRYREFDG 149
                              *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-4850153IPR009072Histone-fold
SuperFamilySSF471131.86E-3758155IPR009072Histone-fold
PfamPF008082.9E-2561125IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-1689107No hitNo description
PROSITE patternPS00685092108IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-16108126No hitNo description
PRINTSPR006151.1E-16127145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDNNSKHVYV GGSGNRGFHG YATFPTPPRP ATEMRTMGVP AHPNQQAEDS DQCTIREQDR  60
FMPIANVIRI MRRILPPHAK ISDDSKETIQ ECVSEFISFV TGEANERCQC EQRKTITAED  120
ILWAMSKLGF DDYIEPLTLY LHRYREFDGG DRGSLRGEPL MLKRPLVDPA YHMLPPNFPM  180
AHHHASYFVY PPPMGNGTYL QGDGSTSQCA VVESDDVESP AEES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-6054146597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2369481e-112AC236948.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0114E01, complete sequence.
GenBankHG9755231e-112HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550304.11e-105PREDICTED: nuclear transcription factor Y subunit B-6 isoform X1
SwissprotQ84W663e-64NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLA0A1U8F2B71e-104A0A1U8F2B7_CAPAN; Nuclear transcription factor Y subunit B-9
TrEMBLA0A2G2Y4921e-104A0A2G2Y492_CAPAN; nuclear transcription factor Y subunit B-6 isoform X1
STRINGXP_009611476.12e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.11e-66nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Kim HU, et al.
    Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues.
    FEBS Open Bio, 2013. 4: p. 25-32
    [PMID:24363987]
  3. Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
    Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
    Mol Plant, 2017. 10(4): p. 645-648
    [PMID:27871811]
  4. Li D, et al.
    MYB89 Transcription Factor Represses Seed Oil Accumulation.
    Plant Physiol., 2017. 173(2): p. 1211-1225
    [PMID:27932421]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Han JD, et al.
    Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program.
    Front Plant Sci, 2017. 8: p. 439
    [PMID:28421087]