PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01116.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 213aa MW: 23505 Da PI: 9.842

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01116.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.7	3.9e-26	2	54	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrW+ +LH +F++av +LGG e+AtPk ile+m+vkgLtl+h+kSHLQ R Sme2.5_01116.1_g00006.1 2 PRLRWSYKLHCSFLDAVGRLGGLERATPKMILEIMHVKGLTLSHIKSHLQLCR 54 8*************************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-22	1	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-11	2	54	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-20	2	56	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MPRLRWSYKL HCSFLDAVGR LGGLERATPK MILEIMHVKG LTLSHIKSHL QLCRNGKTDP 60 PMQDEAEAAN ANGIKKNIMA SPYQMNHPNG TLLPCYYNFS RKSAFDGHPN STLTTNYLGQ 120 ISPTPNIFPL APWKPVPEKM MMLDGRSDPS GKMFRDFFNG STSIQGGDGN TMFGANGRSF 180 STKNTSSTII KEDLPVSLEL SLSSPISLKL TLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015164536.1	9e-67	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A2G2VBP5	1e-56	A0A2G2VBP5_CAPBA; Putative transcription factor RL9
TrEMBL	A0A2G3D764	2e-56	A0A2G3D764_CAPCH; Putative transcription factor RL9
STRING	Solyc02g080860.1.1	1e-57	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-21	G2-like family protein