PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01135.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 241aa MW: 27909 Da PI: 8.9558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01135.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.9	2.7e-06	82	127	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + Er RR++ ++++ +L +llP +K++K +i++ A + I +L Sme2.5_01135.1_g00009.1 82 KHMIQERIRREKQKQSYLNLHKLLPMG-----TKNEKNAIVQTAARRIEEL 127 6899*******************97.....7*********9999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-9	74	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.18E-5	76	129	No hit	No description
PROSITE profile	PS50888	10.436	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-5	82	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEEFFEISWF RDDEVTNDNN FVVNQNAFVS FGSKPNEGFG VFGCGNVSTN HQNMNKRVME 60 FLKTTWSLKH GQGKIEREKV HKHMIQERIR REKQKQSYLN LHKLLPMGTK NEKNAIVQTA 120 ARRIEELVQY KDNLKKMNDE LQMILAQSDQ KKEEFDKTKI EAKVSYPICG VDSMLEVLKC 180 LKNCGTKVNS IQSSFSCQEF STIIEIETKG RVLGEIKFLR IMYDHLPPVF LRSTSTPLSS 240 S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352118.1	1e-119	PREDICTED: transcription factor bHLH92
TrEMBL	A0A3Q7I6U6	1e-108	A0A3Q7I6U6_SOLLC; Uncharacterized protein
STRING	Solyc09g083360.2.1	1e-108	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-36	bHLH family protein