PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01173.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 666aa    MW: 74566 Da    PI: 9.9654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01173.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-091447236
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                               W+t+E++ll+ avk++G ++W+++a +++ +R+
  Sme2.5_01173.1_g00003.1 14 TTWSTWEELLLAFAVKRHGLKDWESVAMELQ-TRS 47
                             68*****************************.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.597866IPR017877Myb-like domain
SuperFamilySSF466894.13E-61071IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-51066IPR009057Homeodomain-like
SMARTSM007171.3E-51268IPR001005SANT/Myb domain
PfamPF002498.3E-81348IPR001005SANT/Myb domain
CDDcd001678.89E-42065No hitNo description
SMARTSM002973.8E-16302407IPR001487Bromodomain
SuperFamilySSF473701.3E-18308408IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.9E-17308410IPR001487Bromodomain
CDDcd043693.64E-16309402No hitNo description
PfamPF004391.7E-10313392IPR001487Bromodomain
PROSITE profilePS5001412.333317388IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEKDSAAATT KTKTTWSTWE ELLLAFAVKR HGLKDWESVA MELQTRSSLP GLWTAQICKD  60
KYRDLRRRFM NSYNDSYDEK IIDQDVDGNG DVLIPWIEEL RQLRVAELKQ EVQRYDLSIQ  120
SLEMKVKEME EDREQSLKEQ SLDDGQKPDL EDVKEERSQN DKNSGADVKP EDFTGKAVSS  180
EESDRENRSF NESNSTENRE TGVKNEPEPV EIGADKPVQE VKPASEEDSY NDSSSDRQEE  240
KKARRDSGDL RDTVSGSKEE TRENSDVQST ATLTKRKRQR GGRSGGDATD MGSPAVGVKG  300
EGAAKSEPLI EFLDIIRSHK RGSVFKRRLD SQKTDKYKST IRQHMDLETV QARIDDGSYC  360
SCPSKFYLDL LLIFNNAIVY FPKSSPESTA ANELRVIVME ELKKIRTQSN DPSPLKIQPK  420
SEVERSDSLF AKHKSTVPIV VCRKRSSISA KAAASSGNNK TEKPSDSKPP LNPKPPAIKS  480
SSNEEESSIK LGVKEKPVTG VRSMRRSSKG RSNNNASQSN SNQNTSAKQT NSNAEKKEEA  540
KPEKKKEEGK KRGAAADFLK RIKKNSPTKG TLVEALKNNP PEEVVKGNKK EQQKKKIDER  600
REAPVRRSSG GGGGISAGKE EGSPSKRSVG RPPKRGGKEV VLQEKRGREN SEKDDSSKRP  660
KKRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279KRKRQR
2657665KRPKKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063169.10.0ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800
TrEMBLA0A3Q7EH340.0A0A3Q7EH34_SOLLC; Uncharacterized protein
STRINGSolyc01g073950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.14e-57DNA-binding bromodomain-containing protein