PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01173.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 380aa    MW: 41258 Da    PI: 8.0152
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01173.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17202256256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sme2.5_01173.1_g00008.1 202 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKHLSLRPRQVEVWFQNRRARTK 256
                              778899***********************************************98 PP
2HD-ZIP_I/II125.32.8e-40202291191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rlskeq++ LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  e
  Sme2.5_01173.1_g00008.1 202 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKHLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELLE 287
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              Lr +l
  Sme2.5_01173.1_g00008.1 288 LR-AL 291
                              *9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-17175259IPR009057Homeodomain-like
SuperFamilySSF466896.84E-18193259IPR009057Homeodomain-like
PROSITE profilePS5007116.698198258IPR001356Homeobox domain
SMARTSM003896.0E-15200262IPR001356Homeobox domain
PfamPF000464.8E-15202256IPR001356Homeobox domain
CDDcd000865.67E-15202259No hitNo description
PROSITE patternPS000270233256IPR017970Homeobox, conserved site
SMARTSM003401.6E-24258301IPR003106Leucine zipper, homeobox-associated
PfamPF021834.2E-10258292IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MKVMELGLSL GDATTSTTNN TTTSSPKSFF LSKKNVTSSC EPEKKKGLGF CMALGINSSS  60
NGRVQQEDEE NNNTSEDTVP VQLDLLPLVP VPLPLSAHNP QSLHWSSDNG SSENGSSGNG  120
GLPAARGFDV NLVPAVGMEE VSSPNSVASS FRMDFGLFKS CVNIMGAGNK RNSESAGGND  180
GGEPERASSR ASDEDENGIN TRKKLRLSKE QSAYLEESFK EHHTLNPKQK LALAKHLSLR  240
PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LHKELLELRA LKTSNPFYMQ  300
LPATTLTMCP SCERVASTTT ATSTAAAPPI TAAATTTTTT TSTSDSIPKA IPFLNSRPRF  360
FPFTTTNNNP NHSPHQSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206TRKKLRL
2250258RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066232.10.0homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-91HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLM1A7650.0M1A765_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-82homeobox from Arabidopsis thaliana