PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01183.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 615aa    MW: 70978.1 Da    PI: 7.7967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01183.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438e-1417941098
                             HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                              +k++ l +p  f+ ++  g ++++   +tl+ + g++W vkl  ++++    l++GW +F+++++L+ gD+++F++dg+ ef   v+
  Sme2.5_01183.1_g00006.1 17 GFKNS-LKIPDGFL-KYliGREEQG--HVTLK-KAGKKWLVKL--NGQK----LEEGWGQFAEEHDLQLGDMLIFRHDGDLEF--DVS 91
                             55665.********.6656544434..56655.69********..8888....***********************8886555..888 PP

                             EE- CS
                       B3 96 vfr 98
                             +f+
  Sme2.5_01183.1_g00006.1 92 IFN 94
                             875 PP
2B348.41.7e-15144223688
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              ++ + l++g l++p+kfa+++g+ + ++  + ++de+ rsW++++    + ++++ ++ W+eF  ang+k gD ++F+++ + 
  Sme2.5_01183.1_g00006.1 144 VKRYCLRNGYLRIPNKFAKANGLTN-KECGVFIRDETQRSWNLRI--YTSCSQVYVGGRWREFSAANGIKLGDQIMFEVITDG 223
                              6788999**************6664.3347***************..77778889999********************88753 PP
3B353.93.2e-17271352490
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l++g l++p kfa+++g++k+++  l+++de+ rsW++kl    +++ +  ++ W +F+ an++k+gD ++F+++ + +
  Sme2.5_01183.1_g00006.1 271 CTMKKYFLTNGYLRIPSKFAKANGLNKKCG--LIIRDERQRSWNLKL--YTSRSLVCVGGSWGKFCAANNIKAGDRLMFEVVTN-G 351
                              5679999*******************9998..999************..77777799999********************8764.3 PP

                              E CS
                       B3  90 f 90 
                              +
  Sme2.5_01183.1_g00006.1 352 K 352
                              3 PP
4B359.46.3e-19392482498
                              E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               ++++++ ++g l+lpk+fa ++  ++k+++  l+++de+ rsW++++    + + + +++GW eF++an+LkegD vvF+++  +
  Sme2.5_01183.1_g00006.1 392 CFIRPYSISRGYLRLPKQFAMANcLINKKCG--LIIRDERQRSWNLRI--YTYNSVVHISGGWVEFCNANDLKEGDYVVFEVVA-N 472
                              678999**************99986666676..999************..66666778999********************887.5 PP

                              EE..EEEEE- CS
                       B3  89 efelvvkvfr 98 
                              ++++  k+++
  Sme2.5_01183.1_g00006.1 473 GEKPIWKFHD 482
                              5556666655 PP
5B338.61.9e-12514595590
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              +++++ l+ g l+lp+k a ++g++  ++ +l+++de+ rsW++ l  r  + ++ +++GW +F +a  L++gD ++F+++ + ++
  Sme2.5_01183.1_g00006.1 514 TIRPYCLTYGYLCLPRKIALRNGLI-GKKCDLIIRDEWQRSWNLIL--RPFGVSVCIRGGWDSFREAYCLDDGDCIMFEVVTD-GE 595
                              5678999999************887.45569***************..*******************************8764.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-18597IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.689796IPR003340B3 DNA binding domain
SuperFamilySSF1019361.8E-177102IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-17894No hitNo description
SMARTSM010191.7E-151096IPR003340B3 DNA binding domain
PfamPF023622.4E-101993IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-15137231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-15137230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505139233IPR003340B3 DNA binding domain
SMARTSM010191.1E-8139234IPR003340B3 DNA binding domain
PfamPF023622.4E-13143225IPR003340B3 DNA binding domain
CDDcd100172.60E-13147218No hitNo description
Gene3DG3DSA:2.40.330.106.0E-19263357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19264358IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.097268361IPR003340B3 DNA binding domain
SMARTSM010191.5E-11269361IPR003340B3 DNA binding domain
PfamPF023626.8E-15272354IPR003340B3 DNA binding domain
CDDcd100179.79E-12272346No hitNo description
Gene3DG3DSA:2.40.330.108.1E-19387480IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-19388480IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465389483IPR003340B3 DNA binding domain
SMARTSM010194.1E-15390484IPR003340B3 DNA binding domain
PfamPF023625.0E-17392482IPR003340B3 DNA binding domain
CDDcd100172.19E-13399468No hitNo description
Gene3DG3DSA:2.40.330.101.7E-12507600IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-14508607IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.361510604IPR003340B3 DNA binding domain
SMARTSM010194.1E-10511605IPR003340B3 DNA binding domain
PfamPF023629.6E-10514597IPR003340B3 DNA binding domain
CDDcd100173.26E-9523589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MEAPPVKPHF FKPILPGFKN SLKIPDGFLK YLIGREEQGH VTLKKAGKKW LVKLNGQKLE  60
EGWGQFAEEH DLQLGDMLIF RHDGDLEFDV SIFNLSHCDA EYAEYLQEEE EEEPHTVEET  120
SKNLEFKEAA TDKPFGHSQF ICTVKRYCLR NGYLRIPNKF AKANGLTNKE CGVFIRDETQ  180
RSWNLRIYTS CSQVYVGGRW REFSAANGIK LGDQIMFEVI TDGEQPIWKF HKYAECLQQE  240
EKEAYTFEEP CVKLELEEAA PHNPDKSQFE CTMKKYFLTN GYLRIPSKFA KANGLNKKCG  300
LIIRDERQRS WNLKLYTSRS LVCVGGSWGK FCAANNIKAG DRLMFEVVTN GKKPIWKFHA  360
ITNPSTVGET SENSDFKEVA PHNPIGQSHF ECFIRPYSIS RGYLRLPKQF AMANCLINKK  420
CGLIIRDERQ RSWNLRIYTY NSVVHISGGW VEFCNANDLK EGDYVVFEVV ANGEKPIWKF  480
HDKPNPSVES SRKAFPHVEA ATHKLSHHSR FVCTIRPYCL TYGYLCLPRK IALRNGLIGK  540
KCDLIIRDEW QRSWNLILRP FGVSVCIRGG WDSFREAYCL DDGDCIMFEV VTDGEKPIWK  600
FHGKISEENI SIIEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092839e-79AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168732.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X4
TrEMBLA0A1U8EZF50.0A0A1U8EZF5_CAPAN; B3 domain-containing protein REM14-like isoform X1
STRINGXP_009597618.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-54B3 family protein