PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01191.1_g00013.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 371aa    MW: 43282.4 Da    PI: 7.0513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01191.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-1526118199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                              ffk++   +   +++l++p kf++ ++++++   + +l+ +sg++W v++  +++ +  yv+ +GW+ Fvk++ L++ D +vFk+d
  Sme2.5_01191.1_g00013.1  26 FFKIM---MGDFRRILRIPQKFVTCFKNSHKLLGQKILTGPSGNTWLVEV--KRTEEDdYVFCNGWEIFVKDHCLEDADLLVFKMD 106
                              56666...4455667*******96665555555677889***********..5555555*************************98 PP

                              SSSEE..EEEEE-S CS
                       B3  86 grsefelvvkvfrk 99 
                              g s f   v++f++
  Sme2.5_01191.1_g00013.1 107 GFSAF--DVMIFDA 118
                              87888..8888886 PP
2B352.49.6e-17268346686
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                              +++ +  +g+l l k+ a++h+ kk e   +tl+  +sgr+W+  + +rk   + v+++GW++Fv +n+L+e D++vF+l  g
  Sme2.5_01191.1_g00013.1 268 MQPTHVYRGQLKLAKEWAQKHMRKKSE--IITLRIpSSGRTWKASIHWRKE--GLVIQSGWEDFVMDNDLEEFDICVFELAqG 346
                              4556666788***********888555..6777765799*******54444..69************************8734 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-1922121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5923119IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-1823124IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-1026119IPR003340B3 DNA binding domain
PfamPF023622.1E-1226118IPR003340B3 DNA binding domain
CDDcd100172.40E-1626117No hitNo description
SuperFamilySSF1019368.04E-20258347IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-20259347IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-12262343No hitNo description
PROSITE profilePS5086312.097263364IPR003340B3 DNA binding domain
SMARTSM010193.6E-8264364IPR003340B3 DNA binding domain
PfamPF023629.5E-14268345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MATMCERCKV LEKQKYWEEF HKRHKFFKIM MGDFRRILRI PQKFVTCFKN SHKLLGQKIL  60
TGPSGNTWLV EVKRTEEDDY VFCNGWEIFV KDHCLEDADL LVFKMDGFSA FDVMIFDASA  120
CEKEGTFFVK KDGNPCKHPE EVTDEHTSEH QSSEDEPSNE DGDDDDDMDE EDNIHEPTRG  180
LKSSRGKEYQ FQSSQPGNGK KMKKILVAKQ DNRKRKCLSM SSLKINVEPE EKRPMFSNGR  240
RVPEKEKMKV HHLASRHTSS VPSLLMTMQP THVYRGQLKL AKEWAQKHMR KKSEIITLRI  300
PSSGRTWKAS IHWRKEGLVI QSGWEDFVMD NDLEEFDICV FELAQGGIHN SKPVVLDVYI  360
YPVENEIMRP L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-161HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338757.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0V0I0F90.0A0A0V0I0F9_SOLCH; Putative B3 domain-containing protein REM16-like
STRINGSolyc02g090170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-37B3 family protein