PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01194.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 773aa    MW: 86185.6 Da    PI: 6.6726
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01194.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.4e-21112167156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              r+k +++t +q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Sme2.5_01194.1_g00003.1 112 RKKYHRHTVQQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 167
                              7999************************************************9877 PP
2START200.38.1e-632845103206
                              HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetl 76 
                               ++a+++l k+a+ +ep+W ks     e++n+de++++f++ +           +ea+r++g+v+m+l++lv++++d++ qW+e++
  Sme2.5_01194.1_g00003.1 284 VNQAMEQLKKMAATGEPLWIKSFetgrEILNYDEYMKEFPPIDKsgdvkmkrMCIEASRETGIVFMELPRLVQTFMDVN-QWKEMF 368
                              57899*****************99***************997778999**9999*************************.****** PP

                              S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                    START  77 a....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                              a    ka+t++v ++g        ga+qlm+ae q+l+p+v  R ++fvRy++q +a +w ivdvSvd  +++  ++s+ ++++lp
  Sme2.5_01194.1_g00003.1 369 AsiisKAATVDVFCNGteganswdGAVQLMFAEVQMLTPVVGtRQVYFVRYCKQISAAQWGIVDVSVDKLEPNI-DASLNKCRKLP 453
                              ************************************************************************98.9********** PP

                              EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              Sg+++++ sn h+kv wveh +++++l+++l+r++v+sg+a+ga++w+atlqrqce+
  Sme2.5_01194.1_g00003.1 454 SGCILQEQSNAHCKVMWVEHLECQKSLVDSLYRVIVNSGQAFGARRWMATLQRQCER 510
                              *******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2296163IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2197170IPR009057Homeodomain-like
PROSITE profilePS5007117.799109169IPR001356Homeobox domain
SMARTSM003891.9E-18111173IPR001356Homeobox domain
PfamPF000462.8E-18112167IPR001356Homeobox domain
CDDcd000862.09E-16116167No hitNo description
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PROSITE profilePS5084833.498273513IPR002913START domain
SuperFamilySSF559613.16E-28275510No hitNo description
CDDcd088751.54E-100277509No hitNo description
SMARTSM002342.5E-57282510IPR002913START domain
PfamPF018523.8E-50284510IPR002913START domain
SuperFamilySSF559615.22E-13553759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MGVVDMSNNP HPPHPHETKD FFPSPTLSLS LAGIFRDAGG AGSSGGNLDT REEVEEASRG  60
GRAREETSMV VEISSENSEP MRSRGSDDDL EHDDTCNEDE EDPNNNNNKK KRKKYHRHTV  120
QQIREMEALF KESPHPDEKQ RQQLSKQLGL HPRQVKFWFQ NRRTQIKAIQ ERHENSLLKA  180
EIEKLREENK GLRAIANNPS CPSCGFASPS NIALPAEEQQ LRIENAKLRA EVEKLRAAMG  240
KYPVGASPNS SSSCSGGNEE ENRSALDFYT GIFGLEKSRI MHVVNQAMEQ LKKMAATGEP  300
LWIKSFETGR EILNYDEYMK EFPPIDKSGD VKMKRMCIEA SRETGIVFME LPRLVQTFMD  360
VNQWKEMFAS IISKAATVDV FCNGTEGANS WDGAVQLMFA EVQMLTPVVG TRQVYFVRYC  420
KQISAAQWGI VDVSVDKLEP NIDASLNKCR KLPSGCILQE QSNAHCKVMW VEHLECQKSL  480
VDSLYRVIVN SGQAFGARRW MATLQRQCER LLFFMATNIP TKDTTGVATL AGRKSILTLA  540
QRMSGSFYRI LGASSYNTWN KVPSKTGQED IRVASRKNLT DPGEPLGLIV CAVSSIWLPV  600
SRNVLFDFLK DENHRHEWDV MSNGGPVQSI ANLAKGQDKG NAVSIQAVKL RENNMWILQD  660
AWTNAYESAV IYAPVEIPGM QTVITGCESS NIAVLPSGFS ILPDGLESRP FVITSSPEDR  720
SSEGGSLLTV AFQILTSNSP TAKLSKESVE SINNLLSCAL HKIKARFQCD NGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109113KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-149HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235676.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0V0IS600.0A0A0V0IS60_SOLCH; Putative homeobox-leucine zipper protein GLABRA 2-like
STRINGSolyc03g120620.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]