PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01218.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 397aa MW: 44217.7 Da PI: 5.7372

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01218.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.7	1.5e-13	7	47	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien ++r+v++ kR+++ l KA+ELS+ d+e a+ii s+ Sme2.5_01218.1_g00002.1 7 FIENITKRKVSYKKRQKTFLNKANELSIIGDVEMAIIINSP 47 8*************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.8E-5	1	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-13	6	92	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-11	7	49	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.138	8	46	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MASKNAFIEN ITKRKVSYKK RQKTFLNKAN ELSIIGDVEM AIIINSPYHD EPKVFPNHDA 60 AINTFTKFRD LPASEKSKDI KTQEMVTKKR IKKMEQQLEN ARRKNEVNEF TNKMYEMLNE 120 KDIPTNIHLY DLNDLSYVIN QSLKQVHETI KMKVEGEGST SNATQSIAGM MVPSKTSSEA 180 RVEAPVPMIP LPVPLTMANG TNSEGPRAPL FVPDMAPISV VSMAAPLLVP SATSTQVPQP 240 MFHMTTPLMT FSETDPLVDT SRIYPSPNPL VSFSSQIFPP MVPQMYPPTN LQMDLQRPPG 300 MAPSITMASP MSLPMMTSSI SAPVFPPTTS QVDPSINFPP VDALMSTNYS QNYYAGISNS 360 PVFSETLDWP GYDITTLIDE SFFNNINVQD PNNKNNI

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MASKNAFIEN ITKRKVSYKK RQKTFLNKAN ELSIIGDVEM AIIINSPYHD EPKVFPNHDA  60
AINTFTKFRD LPASEKSKDI KTQEMVTKKR IKKMEQQLEN ARRKNEVNEF TNKMYEMLNE  120
KDIPTNIHLY DLNDLSYVIN QSLKQVHETI KMKVEGEGST SNATQSIAGM MVPSKTSSEA  180
RVEAPVPMIP LPVPLTMANG TNSEGPRAPL FVPDMAPISV VSMAAPLLVP SATSTQVPQP  240
MFHMTTPLMT FSETDPLVDT SRIYPSPNPL VSFSSQIFPP MVPQMYPPTN LQMDLQRPPG  300
MAPSITMASP MSLPMMTSSI SAPVFPPTTS QVDPSINFPP VDALMSTNYS QNYYAGISNS  360
PVFSETLDWP GYDITTLIDE SFFNNINVQD PNNKNNI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582370.1	1e-110	PREDICTED: uncharacterized protein LOC107879963
TrEMBL	A0A1U8HG73	1e-109	A0A1U8HG73_CAPAN; uncharacterized protein LOC107879963

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1329	10	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	2e-20	M-type_MADS family protein