PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01221.1_g00010.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 160aa MW: 18182.7 Da PI: 7.0526

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01221.1_g00010.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C ++F+++ L H+ +H Sme2.5_01221.1_g00010.1 25 FRCRTCLEVFTSSQGLAGHQGKH 47 89*****************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.058	25	52	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MQQQSPRSDM AHHGIMPNPD GLWDFRCRTC LEVFTSSQGL AGHQGKHKSK GIWIKDAPNE 60 KLFCPSADLP THYCWLGNCK STPTVLSSQG HFYHHHQRNQ MAQEPQGVPE RPRSTLEMVL 120 PSPVTPLLIQ DLNLFEHNLN QLVKITNIVD QEGLDLELRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M1DY37	5e-58	M1DY37_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400096282	8e-59	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21