PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01230.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 909aa    MW: 96066 Da    PI: 7.123
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01230.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.16.8e-15823858134
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++C+ ++  Tp++Rrgp g+++LCnaCGl+++ kg
  Sme2.5_01230.1_g00009.1 823 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANKG 858
                              *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547918.11E-102891IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.6E-113582IPR004088K Homology domain, type 1
SMARTSM003222.7E-636137IPR004087K Homology domain
PROSITE profilePS5008411.46937101IPR004088K Homology domain, type 1
CDDcd023964.08E-1339101No hitNo description
PfamPF000137.0E-94092IPR004088K Homology domain, type 1
SuperFamilySSF547914.82E-15139228IPR004088K Homology domain, type 1
SMARTSM003222.5E-12148223IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.4E-15148223IPR004088K Homology domain, type 1
PROSITE profilePS5008414.424149218IPR004088K Homology domain, type 1
CDDcd023963.93E-14151219No hitNo description
PfamPF000133.8E-12152218IPR004088K Homology domain, type 1
SMARTSM003229.1E-7296372IPR004087K Homology domain
SuperFamilySSF547911.67E-11296349IPR004088K Homology domain, type 1
PROSITE profilePS5008412.726297367IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.8E-13297349IPR004088K Homology domain, type 1
CDDcd023961.58E-13300368No hitNo description
PfamPF000131.6E-8301348IPR004088K Homology domain, type 1
SuperFamilySSF547913.65E-15376461IPR004088K Homology domain, type 1
SMARTSM003224.1E-11384459IPR004087K Homology domain
PROSITE profilePS5008415.179385454IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-16386460IPR004088K Homology domain, type 1
CDDcd023962.34E-17387452No hitNo description
PfamPF000137.4E-13387452IPR004088K Homology domain, type 1
PROSITE profilePS500848.722574602IPR004088K Homology domain, type 1
PROSITE profilePS5132014.698687722IPR010399Tify domain
SMARTSM009792.6E-12687722IPR010399Tify domain
PfamPF062003.6E-12690721IPR010399Tify domain
PROSITE profilePS5101713.126754796IPR010402CCT domain
PfamPF062031.8E-15754796IPR010402CCT domain
SMARTSM004011.4E-11817875IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-10818867No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13821864IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.86E-13822877No hitNo description
PROSITE patternPS003440823850IPR000679Zinc finger, GATA-type
PfamPF003206.7E-13823858IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.576827874IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MHENRVAASV PNSSAVAVAV AAATANSSQP PPPLPRRVVF RLLCHASRVG GVIGKSGSII  60
RQLQQDTSAK IHVDVSAPNS DHNRLIVVVA SASVNKKIRL LGLVGDNQRN EEFDGIEVSA  120
AQEALLRVFE RVIEVTAENN GVVLGVENVV SCRLLVKGNQ VGALMGKGGK VIDTIRRENG  180
CRIKVLTSGK MPSCASPNDE IVEIEGDILA VKKALVAVSR RLQDCFSVER TRTVENAPIE  240
LDSEQTLPPG PVDLPAQRSS MSQPITTSSF SGASGCHPGP LDADKFSSVD SKMPLQEVAF  300
RILCANDKVG AIIGKGGTVV RALQNDSGAS IAVGPNVADC NERMITITAL ENLELRKSPA  360
QTAVVLVFDR VLDAGSGMNL GTRSLITFRL VVANSQVGCL LGKGGAIISD IRKETGTSIR  420
IFRGDQVPKC VSDNDEVVQI AGEFVNVQDA LRNVTGRLRE NLLAAKVSNG GVSRNSSSLT  480
SESSYSGHMK EPPFGFHRSS SVSHGDNQHP ELTRSIDNLV LSNKIDHPPS PGLWSSQARP  540
GVNQRGALDF SKGSNSVKGG IELGSGSRSA IVTNTTVKIM VPENIISCVY GEDGSNLTRL  600
RQIEDDDDED VVATGGGAGD GGGGGGIESM DNPTPHIRYD QHHHSHSHAL HNGGAGGSME  660
AAAMNGVEGV SHNALYCPPS EIGPAAGSGA SDQLTLSFQG EVYVFDAVSP EKVQAVLLLL  720
GEYEVPADIP AVNVAPQSQR ASGDFPGRLN QPQRAASLNR FREKRKERCF DKKIRYTVRK  780
EVAMRMQRKK GQFTSAKSLS DEAGSSSADW NEGSGQEEQE TSCRHCNISS KSTPMMRRGP  840
AGPRSLCNAC GLKWANKGIL RDLSKVPAPG AQDQSTKPGE QSNGEPNGSD AMTAAAIITS  900
DGDNPVVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jzx_A1e-122984425141Poly(rC)-binding protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083687.10.0KH domain-containing protein HEN4
TrEMBLA0A0V0IKL50.0A0A0V0IKL5_SOLCH; Putative KH domain-containing protein-like
STRINGPGSC0003DMT4000837720.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-77ZIM-like 1