PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01238.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 484aa    MW: 55444.1 Da    PI: 4.7551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01238.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-112569347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +WT+ E++l++ + + lG+g+Wk I+++   ++t  q+ s+ qk+
  Sme2.5_01238.1_g00008.1 25 PWTEKEHQLFLMGLNNLGKGNWKDISKRYVITKTTTQVASHAQKF 69
                             7*****************************889**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.671774IPR017930Myb domain
SuperFamilySSF466896.95E-142074IPR009057Homeodomain-like
SMARTSM007171.1E-42272IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.0E-142472IPR006447Myb domain, plants
PfamPF002494.3E-102568IPR001005SANT/Myb domain
CDDcd001672.20E-62570No hitNo description
Gene3DG3DSA:1.10.10.608.1E-82565IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEATPNGKPS PQVENNCPRQ RRVIPWTEKE HQLFLMGLNN LGKGNWKDIS KRYVITKTTT  60
QVASHAQKFF CRRKCTTPVE RRRSSINDIQ TVDNSFLAYY HRHQIGSLSP PFTYPYNLGG  120
PNINNNYNMN LGRSNQAGAS NNNSFFMEQN LNTNNFNINS ERFYQGRASN DNLLIIEQNL  180
NNNNVNMNYQ GDIFDGNSFF MEQNLNTNNF NINDGRSNQL EASDNNSFVM EQNPSDNNFG  240
GSNFTEASDN NSFLMEQNLN NNNVNMNFGR FNQFGTFDGN PFFMEQNLNT NNFNINYERS  300
NQLEAFDHNS FVMKQNPNNN NLRGSNLVEA SDNNSFLRVQ NLNNNNVNMT FGRSNQADTF  360
DGNSFFVEQN LNTNNFNINY GRSNQPEASD NNSFVMEQNP SDNDFGRSNL AEAFDNNSFL  420
MEQNLNNNNV NMNFGRSNQV DAFDDNSFFM EQNLSNSNNL IRPMPSRPFL LINLPSPVVN  480
NGEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17182RRKCTTPVERRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.18e-24MYB family protein