PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01265.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 103aa    MW: 11885.4 Da    PI: 6.5166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01265.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.6e-1429972598
                             TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             +h  + e  +  ++e + g+ W+vk+  + + +++++t++Wk+F+ +++Lk+g+ ++F +dgr++f  +v++f+
  Sme2.5_01265.1_g00006.1 29 KHVTE-EARTSAVVEGPCGNGWNVKI--EERENGMFFTDNWKNFAMEQHLKVGELLLFNYDGRKTF--NVRIFN 97
                             44323.34457999************..9*********************************9999..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.65E-12897No hitNo description
SuperFamilySSF1019362.55E-151299IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-41499IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-152699IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-122898IPR003340B3 DNA binding domain
PROSITE profilePS5086310.8984699IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MNNSAANGDD CLYFYKIALP RMKELNFSKH VTEEARTSAV VEGPCGNGWN VKIEERENGM  60
FFTDNWKNFA MEQHLKVGEL LLFNYDGRKT FNVRIFNGNG VER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557297.11e-32PREDICTED: putative B3 domain-containing protein Os04g0347400
RefseqXP_016559777.11e-32PREDICTED: putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1U8FDA93e-31A0A1U8FDA9_CAPAN; Uncharacterized protein
TrEMBLA0A1U8FKM63e-31A0A1U8FKM6_CAPAN; putative B3 domain-containing protein Os04g0347400
STRINGXP_009613235.12e-26(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-10B3 family protein