PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01319.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 381aa    MW: 40902.6 Da    PI: 7.7095
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01319.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-13124168347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky
  Sme2.5_01319.1_g00008.1 124 PWTEEEHRLFLIGLQKLGKGDWRGISRNFVTSRTPTQVASHAQKY 168
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.103.1E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.581320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.771117173IPR017930Myb domain
SuperFamilySSF466891.87E-17119174IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-18120172IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-11121167IPR009057Homeodomain-like
SMARTSM007174.5E-10121171IPR001005SANT/Myb domain
CDDcd001679.19E-9124169No hitNo description
PfamPF002491.8E-10124168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTRRCSHCNN NGHNSRTCPS RTCPSRSGTT AGGPSGGGGG SGGVRLFGVR LTDGSIMKKS  60
ASMGNLSSLH YHSSSSAAAS PNPGSPSSDV LRESVHLTDG YLSDDPAHAS SSANRRIERK  120
KGVPWTEEEH RLFLIGLQKL GKGDWRGISR NFVTSRTPTQ VASHAQKYFI RQSNATRRKR  180
RSSLFDIVAD TATDASNPLP EEQFMLPPRA VESDKEQLAP SATKPIETDF ADSLPSLDLS  240
LKSDFGSMET APSEPVEETK PNTTTSEIPS VFPAFFPAYI PVPYPFWPSN VIPVPEDRGA  300
EPSHHQIVKP IPTVPKEPVN VDELVGMSQL TLAEAGSSHI EPSPLSLKLT AEPSRQSAFH  360
ASTPVKSSEI TKGETAPIQA V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252360.10.0transcription factor MYBS3
TrEMBLA0A3Q7JA320.0A0A3Q7JA32_SOLLC; Uncharacterized protein
STRINGSolyc12g044610.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-92MYB_related family protein