PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01323.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 424aa    MW: 46055.4 Da    PI: 10.2672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01323.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.6e-065777526
                             --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                              Cr++++ G C  G++CkF+H+
  Sme2.5_01323.1_g00005.1 57 YCRHYLK-GRCLEGENCKFSHD 77
                             5******.*************7 PP
2zf-CCCH19.51.7e-06125145525
                              --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                              +C+ +a  G+C++G++C F+H
  Sme2.5_01323.1_g00005.1 125 PCDKYASQGFCNRGSSCLFSH 145
                              7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0285279IPR000571Zinc finger, CCCH-type
SMARTSM003560.0065378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-75377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-45677IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009120148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0029121147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5124147IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4125145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4125146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVNENIGKNE KKRGPLTKES KAKKKAKQRI KRAEQRIKLG VKRLKLPPVV KPKVVKYCRH  60
YLKGRCLEGE NCKFSHDTIP LTKSKSCCDA TAYLTAELRV GAWYILFEIA TSDDCPFDHQ  120
LSKYPCDKYA SQGFCNRGSS CLFSHEITAK TEAVTSPIAS NSSIQVNTNG MSHKDVNSTS  180
SSSGLVPSNS TERTVLEHVR KPAALAPKGI TFLSRGKSLQ GDAIKHEEVG LSSKTDDVDN  240
IQKPHGFMKG ASTIPQGMNF LSFGRAPSAK PSGETLSGML NMDYGVDKLQ LVDMKAKLGS  300
INQMSTRTVS GSVPRGVNFL SVDNAVEDRS HPSERHSAES PIQKRQNIPN TTSSETSLRQ  360
LSSLSPAGQS LIQSAQKSNA EIASSSKAPF LANTPSPIQK ALQSTLAFAS KFDLGVKYRM  420
SNGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238929.10.0uncharacterized protein LOC101254691
TrEMBLA0A3Q7GFE40.0A0A3Q7GFE4_SOLLC; Uncharacterized protein
STRINGSolyc05g009350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720