PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01344.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 372aa    MW: 41445.7 Da    PI: 6.5567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01344.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06154175223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                               C  Cgk F+r  nL+ H+r H
  Sme2.5_01344.1_g00002.1 154 FCDFCGKGFKRDANLRMHMRAH 175
                              6*******************99 PP
2zf-C2H211.70.0008240263123
                              EEETTTT.EEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                              y+C+ C+ ksFs   +Lk+H++ +
  Sme2.5_01344.1_g00002.1 240 YSCTRCNkKSFSVLADLKSHLKHC 263
                              99*******************977 PP
3zf-C2H211.80.00074271287521
                              TTTEEESSHHHHHHHHH CS
                  zf-C2H2   5 dCgksFsrksnLkrHir 21 
                               Cg+sFsrk+ L  H+ 
  Sme2.5_01344.1_g00002.1 271 SCGTSFSRKDKLFGHMA 287
                              5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-6150176No hitNo description
PROSITE profilePS5015712.092153180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-6153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM0035585202235IPR015880Zinc finger, C2H2-like
SMARTSM0035514240262IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-4262287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210268292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSFTGELRHK PTNTNTPLVG DDPRVPLLNL SAVQDRMDSL QKFLSDSVNS NTLLGQHQIN  60
LVSDEITSAI HQIIVNGAAL LSSTQLTNPP SESKINPKSN HKRAFPEVDP RDFENKASES  120
ESKVEVLDED EEDGGDWEII ELDAVELLAE HIHFCDFCGK GFKRDANLRM HMRAHGNQYK  180
TPEALAKPDK YIESISNKRK RFSCPFIGCT RNKTHNKFRP LKSVICVKNH FKRSHCPKMY  240
SCTRCNKKSF SVLADLKSHL KHCGETKWKC SCGTSFSRKD KLFGHMALFE GHMPAVEGEA  300
TAVENEEDVG MDICGGSGNG LLDIRTGSDN GFLDRLMLDG FESIDSYCFQ DLLGSSSPNG  360
LNTVPDTTGW FA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612440.0GQ261244.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI038 mRNA, complete cds.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367873.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLM0ZV910.0M0ZV91_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000088980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-76C2H2 family protein