PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01358.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17280.8 Da    PI: 10.2147
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01358.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.87.6e-101058149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +ri n+  r v fsk r+ ++K  e +   ++ ++a ++fs+ g+ly+y
  Sme2.5_01358.1_g00004.1 10 ERITNEKSRMVAFSKKRKALFKRNEKVECQTGSRIASVVFSPAGRLYTY 58
                             69**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-6261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.764262IPR002100Transcription factor, MADS-box
CDDcd001203.17E-12359No hitNo description
SuperFamilySSF554553.92E-12366IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-9424IPR002100Transcription factor, MADS-box
PfamPF003191.4E-121158IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-92439IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-93960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MATRKKIPIE RITNEKSRMV AFSKKRKALF KRNEKVECQT GSRIASVVFS PAGRLYTYGD  60
VDFAIQKHFC STKLSTSRMK SHQSNSDVVV TGGASGSRSS PTLERNSLRK WVEGIDVEGC  120
QDLNQLLLLK EQLEGTREKM GSIEDAQLFE AMFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582225.18e-57PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G2YZ402e-56A0A2G2YZ40_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000578558e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.14e-10M-type_MADS family protein