PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01379.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 197aa    MW: 22995.2 Da    PI: 6.6234
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01379.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26048.91.9e-1512618146101
                   DUF260  46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                               k+++e++r d+++sl+yeA +r++dP+yG+vgvi+ l++++ +++ +la++++++
  Sme2.5_01379.1_g00008.1 126 RKQVDEHQRADVADSLYYEAYCRIKDPIYGCVGVITVLHEEIYHVQCQLAKVQAQI 181
                              57899***********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031073.6E-10953IPR004146DC1
Gene3DG3DSA:3.30.60.201.3E-41453No hitNo description
SMARTSM002910.00932163IPR000433Zinc finger, ZZ-type
SuperFamilySSF578893.84E-1930114No hitNo description
PfamPF031077.5E-777109IPR004146DC1
Gene3DG3DSA:3.30.60.201.9E-480110No hitNo description
PROSITE profilePS508919.60881181IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-13127178IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKYNEISHFS HPQHMLRYEY SEFPFKCDGC KEIGIGSRYK CTICDYDLHM HCAIPSSSIT  60
HPFYKKCSFQ FLSRPPGNVP RYCNACEKDI TGFIYHCRSC GFDLHPCCAK LPMVLDDGEV  120
KLYLYRKQVD EHQRADVADS LYYEAYCRIK DPIYGCVGVI TVLHEEIYHV QCQLAKVQAQ  180
IDLINQNEDY TFDPSFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-163HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-163HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798303.11e-87PREDICTED: uncharacterized protein LOC104244556
RefseqXP_016455398.11e-87PREDICTED: uncharacterized protein LOC107779469
TrEMBLA0A1S3YTA83e-86A0A1S3YTA8_TOBAC; uncharacterized protein LOC107779469
TrEMBLA0A1U7Y5933e-86A0A1U7Y593_NICSY; uncharacterized protein LOC104244556
STRINGXP_009798303.14e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA471722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-14LBD family protein