PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01440.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 955aa    MW: 104964 Da    PI: 6.9948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01440.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.8e-1753111357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              k  ++t+eq+e+Le+l++++++ps  +r++  ++     +++ rq+kvWFqNrR +ek+
  Sme2.5_01440.1_g00007.1  53 KYVRYTPEQVEALERLYHECPKPSSMRRQQFIREYpilsHIEPRQIKVWFQNRRCREKQ 111
                              5679******************************99*********************97 PP
2START134.99e-4326343729204
                              CTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEE CS
                    START  29 ngdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.Rdfvf 111
                              +g++++ +++ s++++g a+ra+g+v  +++       d++  W ++++++e+l+ + ++  g+++l +++l+a+++l+p Rdf+ 
  Sme2.5_01440.1_g00007.1 263 PGPDSIGIIAISHGCTGMAARACGLVGLDPT------RDRP-SWYRDCRAVEVLNMLPTAngGTIELLYMQLYAPTTLAPsRDFWL 341
                              57899999***********************......8999.****************9999************************ PP

                              EEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHH CS
                    START 112 vRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegak 194
                              +Ry+    +g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s v++v+h++l++++++++lr+l++s+++ ++k
  Sme2.5_01440.1_g00007.1 342 LRYTTVTDDGSFVVCERSLGNTQNGPSmphVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMNLGAWSVPEVLRPLYESSAVLAQK 427
                              **************************9988899***************************************************** PP

                              HHHHHTXXXX CS
                    START 195 twvatlqrqc 204
                              t++a+l++++
  Sme2.5_01440.1_g00007.1 428 TTMAALRQLR 437
                              ******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.41848112IPR001356Homeobox domain
SMARTSM003898.7E-1450116IPR001356Homeobox domain
SuperFamilySSF466894.28E-1550114IPR009057Homeodomain-like
CDDcd000869.94E-1553113No hitNo description
PfamPF000461.4E-1454111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-1755111IPR009057Homeodomain-like
CDDcd146861.29E-5105144No hitNo description
PROSITE profilePS5084822.227187435IPR002913START domain
SMARTSM002344.9E-25196439IPR002913START domain
PfamPF018525.1E-40263437IPR002913START domain
SuperFamilySSF559614.67E-28263437No hitNo description
Gene3DG3DSA:3.30.530.206.0E-20292435IPR023393START-like domain
PfamPF086701.3E-43751881IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MLAESSSGEE LIDKSSVLPH TDHLVRGSLG KSAMVLQVPA TPRDGKSLED NGKYVRYTPE  60
QVEALERLYH ECPKPSSMRR QQFIREYPIL SHIEPRQIKV WFQNRRCREK QRKESSRLQG  120
VNRKLSAMNK LLMEENDRLQ KQVSQLVYEN GYFRKQTQTT KLASKDTSCE SVVTSSQHQL  180
TPQHPPRDAS PAGLLSIAEE TLTEFLSKAT GTAVEWVQMP GMKGCRGGRV KELLCVDYGL  240
ISLRLFSILP HECLGLAEPV GVPGPDSIGI IAISHGCTGM AARACGLVGL DPTRDRPSWY  300
RDCRAVEVLN MLPTANGGTI ELLYMQLYAP TTLAPSRDFW LLRYTTVTDD GSFVVCERSL  360
GNTQNGPSMP HVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLGAWSV PEVLRPLYES  420
SAVLAQKTTM AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLSRGFN EALSGFSSEG  480
WSTLDNDGMD DVTILVNSSP DKLMGLNLSF SDGFTSLSNA VLCARASMLL QSVTPAILLR  540
FLREHRSEWV DNNIDAYSAA AVKVGPCSLP GVRVSNFGGQ LLEVIKLEGV CHSPEDVIMP  600
RDMFLLQLCS GMDENAVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS AKEASSPNRT  660
LDLTSALETG PVGSKVANDL KSTAGTSKSV MTIAFQFAFE SHMQENVASM ARKYVRSFIS  720
SVQRVALALS PSHYGSLGGL RLPLGTPEAH TLAQWIGQSY RHFLGVELLK LGSEGSESIL  780
DSLWHHSDAI ICCSAKALPV FTFANQGGLD MLETTLVALQ DISLEKIFDE HGRKNLCSEF  840
PQIMQQGFAC LQGGICLSSM GRPVSYEKAV AWKVLNEEDV AHYMVYEENV ASMARKYVRS  900
FISSVQRVAL ALSPSHYGSL GGLRLPLGTP EAHTLAQWIL IKNDLRDRKN DFTPI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252354.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A3Q7JAS20.0A0A3Q7JAS2_SOLLC; Uncharacterized protein
STRINGSolyc12g044410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]