PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01453.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 742aa MW: 85267.4 Da PI: 6.4709

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01453.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.9	1.3e-31	74	165	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka l vk +++gkw+v+++++eH Sme2.5_01453.1_g00001.1 74 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSNFVKEH 159 9*************************************998888545677889*************************** PP FAR1 86 nHelap 91 nHel+p Sme2.5_01453.1_g00001.1 160 NHELVP 165 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-30	74	165	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-31	286	378	IPR018289	MULE transposase domain
Pfam	PF04434	4.9E-12	554	600	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.263	566	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	577	604	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MDNEVIEFDI GLGGGGGSED GDGDDVLDEE NVANRSPVID GNVASVRSYS PQGDLDLEPY 60 DGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT 120 KDREIKRPRT ITRVGCKAAL SVKIQDSGKW VVSNFVKEHN HELVPPDQVH CLRSHRQISG 180 PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SMEGDIQLLL 240 DYLKQMNCQN PEFFYAVQGD DDQCTGNVFW ADSKARANYK YFGDTVTFDT TYRSNRYRLP 300 FAPFTGVNHH GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQLPLSMTT DHDAVIRSAI 360 MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FESCWLSLVD 420 KYELRDLDWL QAIYLDRRQW VQVYLRDAFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF 480 KLYEKAVESR TEKEVKADYD TMNTFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF 540 MANKVEDDGL VTTYQVAKFG DDHRAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV 600 TNVLTLPSHY ILKRWSRSAK STVALEDRVA DMINYYLESH TVRYNMLRHE AFKFVEEGAE 660 TVDSYTVAMA ALEEASKKVS LAVKHDGRMS LLNGHCRENL TRNGVRANYN IEDEQRNLSC 720 PFSEFNYLWD FTGSIVVVVC TV

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MDNEVIEFDI GLGGGGGSED GDGDDVLDEE NVANRSPVID GNVASVRSYS PQGDLDLEPY  60
DGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT  120
KDREIKRPRT ITRVGCKAAL SVKIQDSGKW VVSNFVKEHN HELVPPDQVH CLRSHRQISG  180
PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SMEGDIQLLL  240
DYLKQMNCQN PEFFYAVQGD DDQCTGNVFW ADSKARANYK YFGDTVTFDT TYRSNRYRLP  300
FAPFTGVNHH GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQLPLSMTT DHDAVIRSAI  360
MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FESCWLSLVD  420
KYELRDLDWL QAIYLDRRQW VQVYLRDAFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF  480
KLYEKAVESR TEKEVKADYD TMNTFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF  540
MANKVEDDGL VTTYQVAKFG DDHRAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV  600
TNVLTLPSHY ILKRWSRSAK STVALEDRVA DMINYYLESH TVRYNMLRHE AFKFVEEGAE  660
TVDSYTVAMA ALEEASKKVS LAVKHDGRMS LLNGHCRENL TRNGVRANYN IEDEQRNLSC  720
PFSEFNYLWD FTGSIVVVVC TV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027767791.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q7EV48	0.0	A0A3Q7EV48_SOLLC; Uncharacterized protein
STRING	Solyc01g112320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]