PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01455.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 278aa    MW: 31844.4 Da    PI: 9.6398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01455.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18251041499
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              + l++p +f++++++  e++ + tl+ +sg sW+vkl      ++ ++ kGWk+F k n+L++g+ +vF++dg+++f  +v++f++
  Sme2.5_01455.1_g00006.1  25 DELRIPAHFLRHISE--ESPDKATLKCLSGGSWNVKL--HSDEDGLLIHKGWKKFQKNNQLQDGECLVFRYDGDMQF--TVRIFSN 104
                              5799******88864..47779***************..999999********************************..9999986 PP
2B361.41.5e-191862671298
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              +s+ l++p++f+e+ +++  +++t +l++++g++W+v++    ++g + + +GWk+Fv +n+Lkeg ++vF+l+     el+v+vf
  Sme2.5_01455.1_g00006.1 186 SSCFLYVPRSFFEQLSKS-GNKTTAVLRNSEGKRWKVNC--ITQKGYHAFCGGWKQFVIDNKLKEGHVCVFQLVT--ANELNVSVF 266
                              45999*******998433.56679***************..7777889999*********************975..566699988 PP

                              - CS
                       B3  98 r 98 
                              +
  Sme2.5_01455.1_g00006.1 267 E 267
                              6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.71912105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2113105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2113105IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-1415105IPR003340B3 DNA binding domain
CDDcd100176.56E-1615103No hitNo description
PfamPF023624.6E-1625104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-25168267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-22169266IPR015300DNA-binding pseudobarrel domain
CDDcd100179.03E-21172266No hitNo description
SMARTSM010194.2E-15174269IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422175269IPR003340B3 DNA binding domain
PfamPF023623.0E-17186267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MMEEPSLKID KRAVFYKIFC PTITDELRIP AHFLRHISEE SPDKATLKCL SGGSWNVKLH  60
SDEDGLLIHK GWKKFQKNNQ LQDGECLVFR YDGDMQFTVR IFSNNGLERQ VNSTNMVKNQ  120
QASVYDGGSK RKRPQRCPYS SKQTHENATD HEIPRKRAAL EKAEDLLTSK IPQFVKCLKG  180
YNVKRSSCFL YVPRSFFEQL SKSGNKTTAV LRNSEGKRWK VNCITQKGYH AFCGGWKQFV  240
IDNKLKEGHV CVFQLVTANE LNVSVFEDPS ESLLKLAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754408e-96HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089728.11e-154B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7EST51e-156A0A3Q7EST5_SOLLC; Uncharacterized protein
STRINGSolyc01g108930.2.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.13e-18B3 family protein