PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01458.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 195aa    MW: 22305 Da    PI: 9.5708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01458.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-054264123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ F++   L  H+++H
  Sme2.5_01458.1_g00003.1 42 YTCNFCKRGFKSAQALGGHMNVH 64
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.67E-73968No hitNo description
PfamPF139122.8E-64166IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574269IPR007087Zinc finger, C2H2
SMARTSM003550.00624264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MARYSKKLSN NDDNNNNDKE YTYYCGNELD DGLMCSWPPR YYTCNFCKRG FKSAQALGGH  60
MNVHRKDRAK FLMTRHHSQQ QSPSPSDDKY RYSLVTLNTN PNPNPNISSS LAPPPPPPSS  120
SRKIFSHHSS GTGGSHEIMR KYWGKDVVIP RLKSSNAAKD SFYMQDKEFV RLDLAIGLFK  180
ESKQDLDLEL RLGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113764229superman protein
2l1o_A2e-113764229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-52HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241016.18e-67transcriptional regulator SUPERMAN
TrEMBLA0A3Q7GWG31e-64A0A3Q7GWG3_SOLLC; Uncharacterized protein
STRINGSolyc06g053720.1.13e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.15e-18C2H2 family protein