PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01461.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 197aa    MW: 21989.4 Da    PI: 8.0573
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01461.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY361.4e-11177197222
                              --SS-EEEEEEE--TT-SS-E CS
                     WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                              +Dgy+WrKYGqK vk+s+fpr
  Sme2.5_01461.1_g00006.1 177 EDGYRWRKYGQKAVKNSPFPR 197
                              8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-12161197IPR003657WRKY domain
SuperFamilySSF1182904.18E-9168197IPR003657WRKY domain
PROSITE profilePS5081113.804171197IPR003657WRKY domain
PfamPF031062.8E-7177197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGIGGGINTF PFFGENPSNY DQPIIPNIQN PNHEHQQFVP SSYMTLTECL HGSMDYNTLS  60
SAFGMSCSSS SEVVCPHIDN QDSTRKNNIY PTAKPVLDSP IKDQMNIEIP RTPNSSISST  120
SNEAGGQEDS SKIKKKEGQE EGEDKSKKES KGKKKGEKKV KEARFAFMTK SEIDNLEDGY  180
RWRKYGQKAV KNSPFPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755242e-67HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350002.12e-98PREDICTED: probable WRKY transcription factor 71
SwissprotO229007e-21WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2G2YT551e-110A0A2G2YT55_CAPAN; Putative WRKY transcription factor 23
STRINGPGSC0003DMT4000201028e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-18WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]