PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01517.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 348aa    MW: 39782.9 Da    PI: 4.7278
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01517.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1884138357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              k++++  +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k+
  Sme2.5_01517.1_g00008.1  84 KKRRLRVDQVKALEKNFEVDNKLEPERKVKLARELGLQPRQVAIWFQNRRARWKN 138
                              45678899*********************************************95 PP
2HD-ZIP_I/II123.97.7e-4083175193
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl  +qvk+LE++Fe ++kLeperKv+lareLglqprqva+WFqnrRAR+k+kqlE dy+ Lk+++d+lk++ e+L++++e+
  Sme2.5_01517.1_g00008.1  83 EKKRRLRVDQVKALEKNFEVDNKLEPERKVKLARELGLQPRQVAIWFQNRRARWKNKQLEIDYNLLKANFDSLKHNYEALKHDNEA 168
                              69***********************************************************************************9 PP

              HD-ZIP_I/II  87 Lreelke 93 
                              + +e++e
  Sme2.5_01517.1_g00008.1 169 ILKEINE 175
                              9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.15179139IPR001356Homeobox domain
SuperFamilySSF466897.7E-1981141IPR009057Homeodomain-like
SMARTSM003892.0E-1782143IPR001356Homeobox domain
PfamPF000461.5E-1584138IPR001356Homeobox domain
CDDcd000867.06E-1684140No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1991139IPR009057Homeodomain-like
PRINTSPR000311.0E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5119135IPR000047Helix-turn-helix motif
PfamPF021831.7E-14139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MIWTCAEKKY RCSCYEVREV GFRSYTEGQR FCDESFQKQP LYLGSDEHKN WNKHVYSRDF  60
QSMLDGLDDE EATCVEESGV GPEKKRRLRV DQVKALEKNF EVDNKLEPER KVKLARELGL  120
QPRQVAIWFQ NRRARWKNKQ LEIDYNLLKA NFDSLKHNYE ALKHDNEAIL KEINELKSKL  180
YGGNNESKVS VKEEALESET DDKEAEQSKQ YNNSNSTELN FDRIIMNPSI IFTDFKDGSS  240
DSDSSAILNE DNAAISSSGA FLIKSGSRSG SGSGSGSSSP NSNSSLNCFQ FLESNPKSIL  300
ADEVINFSSS QFVKMEEHNF FAGEECCSTL FSDEQAPTLH WYCPDDWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKNKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366219.11e-166PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLM1BEC01e-164M1BEC0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000432511e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-60homeobox protein 16