PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01519.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 195aa    MW: 22305.3 Da    PI: 4.895
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01519.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP64.61.4e-202721671
                  E2F_TDP 16 lleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                             +++k+e+ g++t++eva+++++e               d+kn+rRR+YD lNVL+al++ie+ +++eirwkg
  Sme2.5_01519.1_g00002.1  2 VCKKVEDkGQITYSEVADDIIAEfmamesnssvplnesDEKNIRRRVYDSLNVLMALDVIER-DRKEIRWKG 72
                             89**9999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013724.0E-15172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-16272IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.0E-30276IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-13273IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011384.6E-3776193IPR014889Transcription factor DP, C-terminal
CDDcd144584.02E-2978180IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.73E-3579193No hitNo description
PfamPF087811.3E-3180192IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVCKKVEDKG QITYSEVADD IIAEFMAMES NSSVPLNESD EKNIRRRVYD SLNVLMALDV  60
IERDRKEIRW KGLPNSDARD MEETKKRHAE LMAKIGKKAA YLKDLEEQLA SLQSLKLRNE  120
QLCKTTNGPS QGFSLPFILV QTASHATVEV EISEDMQLVH FDFNSVPFSL HDDAYVLKLM  180
RNYELLESES VSRTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-222791995PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754489e-64HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071357.11e-133transcription factor-like protein DPA isoform X1
RefseqXP_019071358.11e-134transcription factor-like protein DPA isoform X3
SwissprotQ9FNY34e-77DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A3Q7IU121e-132A0A3Q7IU12_SOLLC; Uncharacterized protein
STRINGSolyc09g010670.2.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.32e-79Transcription factor DP