PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01564.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 138aa    MW: 14924.1 Da    PI: 8.9628
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01564.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP68.32.6e-211602483
                      TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83
                             ++a+caar+F+L++eLG+++ ++ti+WLl+ a+p+i  ++g + ++ +e ++ s ++ + 
  Sme2.5_01564.1_g00010.1  1 MPATCAARVFQLTRELGHKTEGETIQWLLERAEPSINSINGAPKIPTTENTDTSTRKRKR 60
                             9*****************************************666663332222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136918.074139IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-17167IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MPATCAARVF QLTRELGHKT EGETIQWLLE RAEPSINSIN GAPKIPTTEN TDTSTRKRKR  60
CDCGNVKLSN NHPIRVNQPN NAATILAPVM VPSQTILPVG SMCSVPARIN SVNGVVNSAN  120
TIDNINKAKC RTGELCQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-39HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339498.14e-51PREDICTED: transcription factor TCP9
SwissprotO646471e-20TCP9_ARATH; Transcription factor TCP9
TrEMBLM1DWQ31e-49M1DWQ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000956262e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.15e-23TCP family protein